Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00153 ATGATTTTCTCGTCTGTTCCAGTCTATTTAGATCCTCCCAATTGGCAGCAGCCACCAGATGATCATCAGCTAAGAAATGAAAACCTCAACGAGATTGCATCCTTTCCCCAGCCACAGCGGCCACCCTCGAGCTCAACAAGGCCTGGTTCGATGGCTGACCGAGCCCGACTAGCCAAGATGCCCCAGCCGGAGGTTCAACTCAAGTGTCCAAGATGTGAATCGTCCAACACAAAGTTTTGCTACTACAACAATTACAACCTTTCTCAGCCTCGTCACTTCTGCAAGACTTGCCGGCGTTACTGGACCCAAGGCGGTGCTCTCCGCAACGTTCCGGTCGGAGGTGGCTGCCGAAGAAACAAGAAGAACAAAAGTAAATCCTCAAAGTCCTCGTCAGAAAGACCAACTACTAGTAATTTAAGCTCAGGCTCGATTCCGTCAGGAAATAGTACAAGAGAGATGATCAATCATTTCCAGCAAAACCCTAATCCGTTTCCCTTCATCTCCTCACTGCCAAGCTTTAGCAGGTATGGAGTTGGAACCTTAGAAGGACCGTCAAACTTCAACGAGATCCAGCTACAAAGTGAAATAGAAGGAGCGGATCATCAATGGCGGTCGCAGCAATTTCCTTTCCTGGGTGGTTTTGAATCGACAGGTTTGTACCCGTATCAAAATGACGGCGTTGAAGCTCCATCTTCAGCTGCTGAAGCTACTCATCTTCAAGAAACGACATTGAATACTAGGGCTACCCAATTTTCTCCTGTTAAAATTGAAGAAAGTCAAATGCTAAACTTAACCAGAGGACCATCGCTAGGAGTTTTGAACAACAGTCAGATCTATGGTGCAAATGCTTGGACAGATTTATCAGGTCTCAGCTCCTCCTCCACCAACCATTTCTTCTAA 900 46.78 MIFSSVPVYLDPPNWQQPPDDHQLRNENLNEIASFPQPQRPPSSSTRPGSMADRARLAKMPQPEVQLKCPRCESSNTKFCYYNNYNLSQPRHFCKTCRRYWTQGGALRNVPVGGGCRRNKKNKSKSSKSSSERPTTSNLSSGSIPSGNSTREMINHFQQNPNPFPFISSLPSFSRYGVGTLEGPSNFNEIQLQSEIEGADHQWRSQQFPFLGGFESTGLYPYQNDGVEAPSSAAEATHLQETTLNTRATQFSPVKIEESQMLNLTRGPSLGVLNNSQIYGANAWTDLSGLSSSSTNHFF 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2388071 2389135 - Bda030699.1 Bda09g00153 12403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00153 299 Pfam Dof domain, zinc finger 66 121 IPR003851 GO:0003677|GO:0006355
Bda09g00153 299 ProSitePatterns Zinc finger Dof-type signature. 69 105 IPR003851 GO:0003677|GO:0006355
Bda09g00153 299 ProSiteProfiles Zinc finger Dof-type profile. 67 121 IPR003851 GO:0003677|GO:0006355
Bda09g00153 299 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 6 296 - -
Bda09g00153 299 MobiDBLite consensus disorder prediction 19 50 - -
Bda09g00153 299 MobiDBLite consensus disorder prediction 12 62 - -
Bda09g00153 299 MobiDBLite consensus disorder prediction 111 155 - -
Bda09g00153 299 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 296 IPR045174 GO:0003700|GO:0006355
Bda09g00153 299 MobiDBLite consensus disorder prediction 129 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00153 Bda-Chr9:2388071 Bda14g00300 Bda-Chr14:2027799 3.36E-62 dispersed
Bda05g00969 Bda-Chr5:58157463 Bda09g00153 Bda-Chr9:2388071 6.15E-66 wgd
Bda07g00589 Bda-Chr7:7221890 Bda09g00153 Bda-Chr9:2388071 4.49E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16353 PF02701 zf-Dof 7.70E-33 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00153 - - jre:108993006 280.026