Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00187 CCAGATGCAGAAGTTATATCTTTATCTCCAAAGTCTCTAATGGCCACGAACCGCTTCCTCTGCGAAGTGTGCAACAAGGGTTTCCAGAGAGACCAGAACCTTCAATTACACCGGCGAGGTCACAATCTACCATGGAAGCTCCGGCAGAGAACTAATAAGGAAGTGAGGAAGAAGGTGTACGTCTGCCCGGAGAAAAACTGCGTTCACCACGAACCGTCGAGAGCCCTCGGCGACCTCACCGGAATAAAGAAACATTTCAGCAGAAAACACGGCGAGAAGAAATGGAAGTGTGAGAAATGCTCTAAGAAATATGCAGTTCAGTCCGATTGGAAAGCTCATAGTAAAATTTGTGGGACGAAGGAGTATAAATGCGATTGTGGTACGCTCTTCTCCAGGAAAGACAGCTACAATACCCACAGAGCTTTTTGCGACACTTTAGTACATGAAAGTTCAAGATTCAATTCAAATTCCAAAGCGAATCAAACTTTCAGACAAGATTTGATTAATGGGTCCTTCTCGGTTTCGTCGAATCCTCAACAAGACCAAGTGATTTCACCGTTTTCACACGTTCTGCTTCAACAAAATCATGTTTTTCCAGGTGAGCCGGCTGATAATATACCGGCAAACAGCCATCTTCTTCGTTCTGATGGGCAAAAACCTAAGCTTCCAGTCTGGCTAAATTGTTCAAATTATAACTCTACCCATTTTAGCTATCCCACTGCTAATTCTCAAATGGGTTTGCAAGAACTGGTTCAATCAAACGCTGTAATGAATATGTTTGGACTTTCAAATCCTTCTGCTCAGCCACAGAACCAGTACGTTAGCAACATCTCTCTGCCGCCATTAAAATGGGGACCAAAGGAGGAAGAGGAAGAAGAAGATAGAGAAAACTTGTCTCAAACGATGACGTATTTGTATTCCAACAATCAAAACAACAACCAGCAAATCTCAGCTCACATGTCAGCCAGTGCACTGTTGCAGAGAGCAACTCAGATGGGATCCACAAGACCAAACCCAGCGATTTTTGGGTCCATGACCTCGAGCGAAGGCCCTCTGTCGCAAGTGACAGCGCCAATTTCCGATCCAGTCGAGAAGTTTCTGAACGGTCAAGGCGATCACGGCTTGATGAGCCAGATGTCTTCGTCTTCAGCTTCTGGTTCTAGTTTAGGAGACGGGTTATTGCTCGGTGATTTGAATTACTCCAAACCAGTCTTGATTTCGGGTAGTAATTTTGACCATCTGATGATGATAAATGGAAGTCTAGACCAAAGTGGGAAACTCAAGATGGGCGGCAATGAAAGTGAGCAGATGAGTTTAACCAGAGATTTTCTCGGCGTCGGAACTGATCTTTCGAACGAACTGTTGAAGTTCGACGATCATGGCAACTACCTGAACCAGTACAGTGGAGGTGGATAA 1416 44.7 PDAEVISLSPKSLMATNRFLCEVCNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKNCVHHEPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSYNTHRAFCDTLVHESSRFNSNSKANQTFRQDLINGSFSVSSNPQQDQVISPFSHVLLQQNHVFPGEPADNIPANSHLLRSDGQKPKLPVWLNCSNYNSTHFSYPTANSQMGLQELVQSNAVMNMFGLSNPSAQPQNQYVSNISLPPLKWGPKEEEEEEDRENLSQTMTYLYSNNQNNNQQISAHMSASALLQRATQMGSTRPNPAIFGSMTSSEGPLSQVTAPISDPVEKFLNGQGDHGLMSQMSSSSASGSSLGDGLLLGDLNYSKPVLISGSNFDHLMMINGSLDQSGKLKMGGNESEQMSLTRDFLGVGTDLSNELLKFDDHGNYLNQYSGGG 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2692583 2694373 + Bda030736.1 Bda09g00187 12437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00187 471 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 1 450 - -
Bda09g00187 471 Gene3D Classic Zinc Finger 3 72 - -
Bda09g00187 471 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 450 - -
Bda09g00187 471 SUPERFAMILY beta-beta-alpha zinc fingers 18 115 IPR036236 -
Bda09g00187 471 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
Bda09g00187 471 Gene3D Classic Zinc Finger 73 154 - -
Bda09g00187 471 SMART c2h2final6 19 41 IPR013087 -
Bda09g00187 471 SMART c2h2final6 60 90 IPR013087 -
Bda09g00187 471 SMART c2h2final6 95 115 IPR013087 -
Bda09g00187 471 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 41 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01725 Bda-Chr3:56717283 Bda09g00187 Bda-Chr9:2692583 6.97E-121 dispersed
Bda09g00187 Bda-Chr9:2692583 Bda10g00126 Bda-Chr10:3491616 2.36E-100 dispersed
Bda09g00187 Bda-Chr9:2692583 Bda04g00061 Bda-Chr4:1006327 1.53E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16356 None None None None Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00187 K25870 - vvi:100248459 446.817