Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00212 ATGGAAGCTCCGAAGTATTTCCAAACCGATTTCCGCTCACAGTTGCTGAACGAAAGTCGCCACTCAGACACTAAGACGGCCGGATGTAACGACAGTTTTATCGTCGAGGAACTCCTCGACTTCTCAAACGATGAAATGGCATTGCTCGACGCTAATGGCTCTTTTGATTGCCTCAATGTCAGCTCCACTGACTCGTCCACCGTCTCCCTCCTCGACAGCTCAAATTCTTCTTCGTTTTCTGGCTGTGAACCAGCGTCTTTCCCCGGTGATTTTGCCGCTGACGTTCAATTCTCCAGCGATTTCTGTGTTGCGTATGACGATTTAGCGGAGCTCGAATGTCTTTCGAATTTCGCTGAGGAATCATTCTCCAGCGAAGATTTGCAGAAGCTCCAGCTAATATCAGGCATGAAAGCAGTCCAACCCGATGACACCGGCCGAAACTTCCCGGTGTTCCACTCCGACGTCTCTGTGCCGGCCAAGGCGCGTAGTAAGCGATCGCGTGCCGCGCCATGCATATGGACTTCTAGTCTCCCCTCACTTTCTCCGATGTCTTCATCCTCGAAAACCGACATTGTAGCTCCGGTGCCACCGCATCCCGCTAAAAAAGCAGGGAGAGCATCGCCAAACGGGAAGTCATTTTGCAACGGAGCATCAGAAAGAACGGGAGAGGGCCGTAAGTGCCTGCATTGCAACACCGATCAGACGCCGCAGTGGCGAACAGGACCGATGGGTCCGAAGACTCTCTGCAATGCTTGCGGCGTCCGGTTCAAATCCGGGAGACTGGTGCCGGAGTACCGGCCGGCAGCCAGCCCGACATTCGTGCTGAAAAGCACTCAAACTCGCATCGGAAAGTGA 855 53.57 MEAPKYFQTDFRSQLLNESRHSDTKTAGCNDSFIVEELLDFSNDEMALLDANGSFDCLNVSSTDSSTVSLLDSSNSSSFSGCEPASFPGDFAADVQFSSDFCVAYDDLAELECLSNFAEESFSSEDLQKLQLISGMKAVQPDDTGRNFPVFHSDVSVPAKARSKRSRAAPCIWTSSLPSLSPMSSSSKTDIVAPVPPHPAKKAGRASPNGKSFCNGASERTGEGRKCLHCNTDQTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLKSTQTRIGK 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2996227 2997224 + Bda030763.1 Bda09g00212 12462

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00212 284 PANTHER GATA TRANSCRIPTION FACTOR 1 275 - -
Bda09g00212 284 ProSiteProfiles GATA-type zinc finger domain profile. 221 257 IPR000679 GO:0006355|GO:0043565
Bda09g00212 284 CDD ZnF_GATA 226 284 IPR000679 GO:0006355|GO:0043565
Bda09g00212 284 SMART GATA_3 221 271 IPR000679 GO:0006355|GO:0043565
Bda09g00212 284 Pfam GATA zinc finger 227 260 IPR000679 GO:0006355|GO:0043565
Bda09g00212 284 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 277 - -
Bda09g00212 284 Gene3D - 221 271 IPR013088 GO:0006355|GO:0008270
Bda09g00212 284 ProSitePatterns GATA-type zinc finger domain. 227 252 IPR000679 GO:0006355|GO:0043565
Bda09g00212 284 PANTHER GATA TRANSCRIPTION FACTOR 1 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00212 - - - zju:107420464 292.352
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00433 Bda-Chr3:3736013 Bda09g00212 Bda-Chr9:2996227 9.27E-112 dispersed
Bda09g00212 Bda-Chr9:2996227 Bda09g00660 Bda-Chr9:10022436 0 dispersed
Bda09g00212 Bda-Chr9:2996227 Bda10g00830 Bda-Chr10:42690265 1.52E-67 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda03g00433 . 75 291 C2C2-Gata Transcription Factor Family AT5G25830 51.4 4.8e-58 221.9
Bda09g00660 . 76 275 C2C2-Gata Transcription Factor Family AT5G25830 51.1 4.0e-49 192.2
Bda09g00212 . 74 275 C2C2-Gata Transcription Factor Family AT5G25830 51.1 9.0e-49 191.0
Bda03g01053 BCT 1 240 C2C2-Gata Transcription Factor Family AT3G60530 51.4 3.7e-52 201.8
Bda04g00030 CCT,ECH 38 205 C2C2-Gata Transcription Factor Family AT5G66320 58.2 5.8e-43 171.8
Bda14g00992 . 2 173 C2C2-Gata Transcription Factor Family AT5G66320 55.7 4.1e-41 165.6
Bda14g00992 . 8 173 C2C2-Gata Transcription Factor Family AT3G51080 60.5 2.9e-41 166.0
Bda04g00030 CCT,ECH 38 185 C2C2-Gata Transcription Factor Family AT3G51080 63.9 7.2e-40 161.4
Bda06g00001 . 1 328 C2C2-Gata Transcription Factor Family AT4G17570 57.2 3.9e-91 332.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16357 PF00320 GATA 1.30E-15 CL0167 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00212 Bda_Chr09 FPKM 7.536303 7.560708 5.948148 7.194033 29.933638 26.128981 33.864094 2.381137 2.534815