Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00212 ATGGAAGCTCCGAAGTATTTCCAAACCGATTTCCGCTCACAGTTGCTGAACGAAAGTCGCCACTCAGACACTAAGACGGCCGGATGTAACGACAGTTTTATCGTCGAGGAACTCCTCGACTTCTCAAACGATGAAATGGCATTGCTCGACGCTAATGGCTCTTTTGATTGCCTCAATGTCAGCTCCACTGACTCGTCCACCGTCTCCCTCCTCGACAGCTCAAATTCTTCTTCGTTTTCTGGCTGTGAACCAGCGTCTTTCCCCGGTGATTTTGCCGCTGACGTTCAATTCTCCAGCGATTTCTGTGTTGCGTATGACGATTTAGCGGAGCTCGAATGTCTTTCGAATTTCGCTGAGGAATCATTCTCCAGCGAAGATTTGCAGAAGCTCCAGCTAATATCAGGCATGAAAGCAGTCCAACCCGATGACACCGGCCGAAACTTCCCGGTGTTCCACTCCGACGTCTCTGTGCCGGCCAAGGCGCGTAGTAAGCGATCGCGTGCCGCGCCATGCATATGGACTTCTAGTCTCCCCTCACTTTCTCCGATGTCTTCATCCTCGAAAACCGACATTGTAGCTCCGGTGCCACCGCATCCCGCTAAAAAAGCAGGGAGAGCATCGCCAAACGGGAAGTCATTTTGCAACGGAGCATCAGAAAGAACGGGAGAGGGCCGTAAGTGCCTGCATTGCAACACCGATCAGACGCCGCAGTGGCGAACAGGACCGATGGGTCCGAAGACTCTCTGCAATGCTTGCGGCGTCCGGTTCAAATCCGGGAGACTGGTGCCGGAGTACCGGCCGGCAGCCAGCCCGACATTCGTGCTGAAAAGCACTCAAACTCGCATCGGAAAGTGA 855 53.57 MEAPKYFQTDFRSQLLNESRHSDTKTAGCNDSFIVEELLDFSNDEMALLDANGSFDCLNVSSTDSSTVSLLDSSNSSSFSGCEPASFPGDFAADVQFSSDFCVAYDDLAELECLSNFAEESFSSEDLQKLQLISGMKAVQPDDTGRNFPVFHSDVSVPAKARSKRSRAAPCIWTSSLPSLSPMSSSSKTDIVAPVPPHPAKKAGRASPNGKSFCNGASERTGEGRKCLHCNTDQTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLKSTQTRIGK 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2996227 2997224 + Bda030763.1 Bda09g00212 12462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00212 284 PANTHER GATA TRANSCRIPTION FACTOR 1 275 - -
Bda09g00212 284 ProSiteProfiles GATA-type zinc finger domain profile. 221 257 IPR000679 GO:0006355|GO:0043565
Bda09g00212 284 CDD ZnF_GATA 226 284 IPR000679 GO:0006355|GO:0043565
Bda09g00212 284 SMART GATA_3 221 271 IPR000679 GO:0006355|GO:0043565
Bda09g00212 284 Pfam GATA zinc finger 227 260 IPR000679 GO:0006355|GO:0043565
Bda09g00212 284 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 277 - -
Bda09g00212 284 Gene3D - 221 271 IPR013088 GO:0006355|GO:0008270
Bda09g00212 284 ProSitePatterns GATA-type zinc finger domain. 227 252 IPR000679 GO:0006355|GO:0043565
Bda09g00212 284 PANTHER GATA TRANSCRIPTION FACTOR 1 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00433 Bda-Chr3:3736013 Bda09g00212 Bda-Chr9:2996227 9.27E-112 dispersed
Bda09g00212 Bda-Chr9:2996227 Bda09g00660 Bda-Chr9:10022436 0 dispersed
Bda09g00212 Bda-Chr9:2996227 Bda10g00830 Bda-Chr10:42690265 1.52E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16357 PF00320 GATA 1.30E-15 CL0167 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00212 - - zju:107420464 292.352