Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda09g00212 | ATGGAAGCTCCGAAGTATTTCCAAACCGATTTCCGCTCACAGTTGCTGAACGAAAGTCGCCACTCAGACACTAAGACGGCCGGATGTAACGACAGTTTTATCGTCGAGGAACTCCTCGACTTCTCAAACGATGAAATGGCATTGCTCGACGCTAATGGCTCTTTTGATTGCCTCAATGTCAGCTCCACTGACTCGTCCACCGTCTCCCTCCTCGACAGCTCAAATTCTTCTTCGTTTTCTGGCTGTGAACCAGCGTCTTTCCCCGGTGATTTTGCCGCTGACGTTCAATTCTCCAGCGATTTCTGTGTTGCGTATGACGATTTAGCGGAGCTCGAATGTCTTTCGAATTTCGCTGAGGAATCATTCTCCAGCGAAGATTTGCAGAAGCTCCAGCTAATATCAGGCATGAAAGCAGTCCAACCCGATGACACCGGCCGAAACTTCCCGGTGTTCCACTCCGACGTCTCTGTGCCGGCCAAGGCGCGTAGTAAGCGATCGCGTGCCGCGCCATGCATATGGACTTCTAGTCTCCCCTCACTTTCTCCGATGTCTTCATCCTCGAAAACCGACATTGTAGCTCCGGTGCCACCGCATCCCGCTAAAAAAGCAGGGAGAGCATCGCCAAACGGGAAGTCATTTTGCAACGGAGCATCAGAAAGAACGGGAGAGGGCCGTAAGTGCCTGCATTGCAACACCGATCAGACGCCGCAGTGGCGAACAGGACCGATGGGTCCGAAGACTCTCTGCAATGCTTGCGGCGTCCGGTTCAAATCCGGGAGACTGGTGCCGGAGTACCGGCCGGCAGCCAGCCCGACATTCGTGCTGAAAAGCACTCAAACTCGCATCGGAAAGTGA | 855 | 53.57 | MEAPKYFQTDFRSQLLNESRHSDTKTAGCNDSFIVEELLDFSNDEMALLDANGSFDCLNVSSTDSSTVSLLDSSNSSSFSGCEPASFPGDFAADVQFSSDFCVAYDDLAELECLSNFAEESFSSEDLQKLQLISGMKAVQPDDTGRNFPVFHSDVSVPAKARSKRSRAAPCIWTSSLPSLSPMSSSSKTDIVAPVPPHPAKKAGRASPNGKSFCNGASERTGEGRKCLHCNTDQTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLKSTQTRIGK | 284 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2996227 | 2997224 | + | Bda030763.1 | Bda09g00212 | 12462 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda09g00212 | 284 | PANTHER | GATA TRANSCRIPTION FACTOR | 1 | 275 | - | - | |
Bda09g00212 | 284 | ProSiteProfiles | GATA-type zinc finger domain profile. | 221 | 257 | IPR000679 | GO:0006355|GO:0043565 | |
Bda09g00212 | 284 | CDD | ZnF_GATA | 226 | 284 | IPR000679 | GO:0006355|GO:0043565 | |
Bda09g00212 | 284 | SMART | GATA_3 | 221 | 271 | IPR000679 | GO:0006355|GO:0043565 | |
Bda09g00212 | 284 | Pfam | GATA zinc finger | 227 | 260 | IPR000679 | GO:0006355|GO:0043565 | |
Bda09g00212 | 284 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 221 | 277 | - | - | |
Bda09g00212 | 284 | Gene3D | - | 221 | 271 | IPR013088 | GO:0006355|GO:0008270 | |
Bda09g00212 | 284 | ProSitePatterns | GATA-type zinc finger domain. | 227 | 252 | IPR000679 | GO:0006355|GO:0043565 | |
Bda09g00212 | 284 | PANTHER | GATA TRANSCRIPTION FACTOR | 1 | 275 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g00433 | Bda-Chr3:3736013 | Bda09g00212 | Bda-Chr9:2996227 | 9.27E-112 | dispersed | |
Bda09g00212 | Bda-Chr9:2996227 | Bda09g00660 | Bda-Chr9:10022436 | 0 | dispersed | |
Bda09g00212 | Bda-Chr9:2996227 | Bda10g00830 | Bda-Chr10:42690265 | 1.52E-67 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16357 | PF00320 | GATA | 1.30E-15 | CL0167 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda09g00212 | - | - | zju:107420464 | 292.352 |