Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00213 ATGGTTTCCTTCCTGTTCAGAAACTCTTCCTCTTACTCGTACAAACCTGCCCTCATCGACGCCGATGCTTCTGAGACCCTGTCGTTTTCCCAGCTTAAATCCATGGTGATTAAGGTCTCCCATGGCTTACTTCATCTGGGTATCAAGAAGAACGACGTTGTACTGATCTTCGCCCCCAATTCAATCCAATTTCCGATCTGTTTCCTCGGAATTATAGCCGTCGGAGCTATTGCGACAACTTGTAATCCGATTTACACTCTCTCTGAACTGACAAAGCAAGTTAGAGATTCGAAACCGAAGCTCGTAATTACAGTTGCTGAGTTATGGGACAAAGTGATGAATTTCAATCTCCCGACAGTGTTACTCGGACCAGAAGGGTCATTTCCGTCGGTATCATCGAATTCGAAGATTCTAACCTTTCATGATTTGGTCCAATTAGGCCGGTCGGAGTCCCATTTTCCGGCGGTGAAAATCAAGCAGACTGACACAGCTGTGCTATTGTACTCATCGGGAACAACAGGTACTAGTAAGGGGGTTATTCTATCCCATAGAAATTTCATATCGGCGTCTCAAATGATTGTATTGGACCAAATAATGGCTGGGGAAATGCACAATGTTTTTCTCAACGTTTTGCCTCTATTTCATGTTTTTGGACTGTGTTGTATTACATTTTCACAGCTTCAGAAAGGCAATGCTGTTGTGATAATGTCTAAATTTGAATTTGAAAAGTTCCTATCGGCAGTCGAGAAGTACAAGGTCACTGATTTGTGGATTGTGCCTCCAATCGTACTGGCTTTGGCCAAGCAAAGTGTGGTTAAGAAGTATAATCTTTCCTCATTGAGGCATATAGGTTCTGGGGCTGCACCTTTGGGCAAAGATTTAATGGAGGAATGTGCTAAGAACATTCCCACTGCTCAGGTTATTCAGGGATATGGTATGACTGAAACCTGTGGAATCATCGCTTGGAGAACCCGGATGTGGGACATTGCACCGGCTGAGCTCGAAGGGCTACTAGTGTCTCACCCGGAAATATTAGATTCCGTTGTTATCCCATTCCCGGATGCCGAAGCCGGAGAGGTACCGATTGCATACGTAGTTCGCTCTCCCAACAGTTCACTCACAGAAGAAGACATAATGGAATTCATTGCCAAACAGGTAAATAGTTTGATTTATAGACGAAGTCGGCCTCCTGGGAAAATCTTGAGGAGAGAGCTGATCGAGAAAGTTCGCTCCAAAATTTGA 1242 44.28 MVSFLFRNSSSYSYKPALIDADASETLSFSQLKSMVIKVSHGLLHLGIKKNDVVLIFAPNSIQFPICFLGIIAVGAIATTCNPIYTLSELTKQVRDSKPKLVITVAELWDKVMNFNLPTVLLGPEGSFPSVSSNSKILTFHDLVQLGRSESHFPAVKIKQTDTAVLLYSSGTTGTSKGVILSHRNFISASQMIVLDQIMAGEMHNVFLNVLPLFHVFGLCCITFSQLQKGNAVVIMSKFEFEKFLSAVEKYKVTDLWIVPPIVLALAKQSVVKKYNLSSLRHIGSGAAPLGKDLMEECAKNIPTAQVIQGYGMTETCGIIAWRTRMWDIAPAELEGLLVSHPEILDSVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDIMEFIAKQVNSLIYRRSRPPGKILRRELIEKVRSKI 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3006493 3009227 - Bda030765.2 Bda09g00213 12463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00213 413 Gene3D - 29 182 - -
Bda09g00213 413 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 327 412 - -
Bda09g00213 413 Coils Coil 406 413 - -
Bda09g00213 413 Pfam AMP-binding enzyme 7 360 IPR000873 -
Bda09g00213 413 SUPERFAMILY Acetyl-CoA synthetase-like 3 411 - -
Bda09g00213 413 Gene3D - 26 316 - -
Bda09g00213 413 Pfam AMP-binding enzyme C-terminal domain 333 388 IPR025110 -
Bda09g00213 413 Gene3D - 323 412 IPR045851 -
Bda09g00213 413 ProSitePatterns Putative AMP-binding domain signature. 166 177 IPR020845 -
Bda09g00213 413 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 1 321 - -
Bda09g00213 413 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 327 412 - -
Bda09g00213 413 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 1 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00683 Bda-Chr6:9447641 Bda09g00213 Bda-Chr9:3006493 1.02E-19 dispersed
Bda09g00213 Bda-Chr9:3006493 Bda03g01713 Bda-Chr3:56597464 4.99E-25 dispersed
Bda07g00643 Bda-Chr7:7773464 Bda09g00213 Bda-Chr9:3006493 1.36E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00213 K01904 - fve:101299638 486.878