Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00218 ATGTTTAATCAGTTCGAAGCTTCTGCAAACCCACTAATGCAGCTCCAAGGCTTTGATTTGGAGCTTCATCATTTCATGGCCAGTTCTAACTTCGACCAGTTTGTCGATCTAATCAGAGGAGAAAACGAAAACCCAGTTTATGATGGGTGTTTTGCAGATGATCAGTTTGGTCCGTCAAACCCAGGAGATATCTTGAATTTCAATGGCGTTCCTGGATCAGACGGCCAAGACTTTATGATGTTTAACAGATTGGAGAGATTTGATGATGGAGAAGTGATCAAGGGCGGGGAAGAAGATGATGAGAATGATGAGGAGGATTCTTCTGCTACGACTACGACAGTGACGAATGAAACGACGGCGAAGGGGGGTAAGGCCGACAGATCGAGAACTTTGATTTCAGAGAGAAGAAGAAGAGGGAGGATGAAAGAGAAGCTTTATGCACTGCGTTCATTGGTTCCAAACATAACCAAGATGGATAAAGCCTCCATTGTTGGAGATGCTGTATTATACGTGCAAGAGCTGCAAATGCAGGCCAGAAAACTCAAGGCTGAGATAAAGGGCATAGAAGAAACGATTGGAAGAGCAGAAGGCTATGGAGGAGTAGCTCAAAACCCTGAAAAGATTCATCGGATTCCTCGTTCTTCCAGTTCGGTTCCAAAGAAAATCACTCAGATGGATATTTTTCAGGTCGAGGAAAGAGGGTTTTACTTGAGGATAGAATGCGAGAGAGGAGATGGAGTAGCCAGGTCTCTTTACAAAGTTGTTGAATCTATGAGGGGATTTAATGTTCAGTGCTCAAATTTGACGACTCAGACTCAAACATTTGTTTTGACTGCAACTCTCAACGTGGTGAAAGATTGTGAGCAGGAGATGCACTTGCCAAATTTGAAGGTTTGGTTGACGGGAGCTCTTCTTAACCAAGGATTTGAGTTTAAACCACCTTTCCCCAACTTGTAG 957 43.47 MFNQFEASANPLMQLQGFDLELHHFMASSNFDQFVDLIRGENENPVYDGCFADDQFGPSNPGDILNFNGVPGSDGQDFMMFNRLERFDDGEVIKGGEEDDENDEEDSSATTTTVTNETTAKGGKADRSRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLYVQELQMQARKLKAEIKGIEETIGRAEGYGGVAQNPEKIHRIPRSSSSVPKKITQMDIFQVEERGFYLRIECERGDGVARSLYKVVESMRGFNVQCSNLTTQTQTFVLTATLNVVKDCEQEMHLPNLKVWLTGALLNQGFEFKPPFPNL 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3035966 3037969 + Bda030770.1 Bda09g00218 12468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00218 318 Gene3D - 116 191 IPR036638 GO:0046983
Bda09g00218 318 MobiDBLite consensus disorder prediction 92 136 - -
Bda09g00218 318 PANTHER TRANSCRIPTION FACTOR FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR 91 311 - -
Bda09g00218 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 188 IPR036638 GO:0046983
Bda09g00218 318 Pfam Helix-loop-helix DNA-binding domain 130 175 IPR011598 GO:0046983
Bda09g00218 318 SMART finulus 131 180 IPR011598 GO:0046983
Bda09g00218 318 MobiDBLite consensus disorder prediction 122 136 - -
Bda09g00218 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Bda09g00218 318 Coils Coil 171 191 - -
Bda09g00218 318 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 91 311 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda02g00730 Bda09g00218 CCT
Bda07g00648 Bda09g00218 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00218 Bda-Chr9:3035966 Bda11g01575 Bda-Chr11:48947578 3.91E-14 dispersed
Bda01g01894 Bda-Chr1:55110866 Bda09g00218 Bda-Chr9:3035966 1.38E-09 transposed
Bda14g00621 Bda-Chr14:4668395 Bda09g00218 Bda-Chr9:3035966 2.93E-16 transposed
Bda02g00730 Bda-Chr2:48132745 Bda09g00218 Bda-Chr9:3035966 3.21E-06 wgd
Bda07g00648 Bda-Chr7:7818050 Bda09g00218 Bda-Chr9:3035966 1.56E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16359 PF00010 HLH 4.00E-09 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00218 - - qsu:112032263 296.204