Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda09g00221 | ATGATTTCAGAGGTAGAATCATCCTTCCCGAACGCATCTCTCCATTACAGTCTCTCCATTCTCAAAGAAAAGGTTCATCAGATTGAATCAGTGATTACCCTCTTTATCTCTCAAGATCAAACCCACTACGATTCATCGTCTCTGCCAATCTCCACCATAAACTCGCTGATTCAAGAAATCGTCTTCACTGCGTCTTCCATGCTGGTAACTTCTCAGCAAACGCCTCCTTCTGGTTCAAACCCTCGTAATATGATCGACCGGGATGAATTCCCCCATCATCGCCGTCCGAACGAGACGACGTCGGTTGATTGGTATGCACCAGAAAGCTTCAACAATGGCGGGACATCAAATAATTGTCAGAATTTCGAAAAAAAGAAAGAAGAGAATCAAAATCGCTCTCCTAAGCATTACGATATAATAGAATTACAGGCTGCAGACTTGTTAGCTAAGTACACCCATTACTGCCAAGTCTGTGCAAAAGGGTTCAAACGAGATGCAAATTTGAGAATGCACATGAGGGCCCATGGCGACGAGTATAAAACCAGTGCAGCTTTAAGCAACCCAATGAAAAACGACGAAAGTTGGAAGAAGAGAGAGGATTTTCCGCCGAGAAAATACTCATGCCCGCAGGAAGGTTGCCGGTGGAATCGAAAGCACGCCAAGTTTCAGCCTCTGAAGTCGATGATTTGCGTGAAGAATCATTATAAGAGAAGCCACTGCCCTAAAATGTACATATGCAAGAGGTGCAACCAGAAGCAATTTTCAGTTCTGTCTGATTTGAAGACCCATGAGAAGCACTGCGGAGATCTGAAATGGCAGTGTTCTTGCGGAACTACGTTTTCCAGAAAAGATAAGTTAATGGGTCATGTTGCTTTGTTTGTGGGTCATTCGCCATTGCTGAGTTCTGTGATGAAGCAGAGAGAGTCTGAAAGACAAACTGTAGATTACAGCTAG | 954 | 43.92 | MISEVESSFPNASLHYSLSILKEKVHQIESVITLFISQDQTHYDSSSLPISTINSLIQEIVFTASSMLVTSQQTPPSGSNPRNMIDRDEFPHHRRPNETTSVDWYAPESFNNGGTSNNCQNFEKKKEENQNRSPKHYDIIELQAADLLAKYTHYCQVCAKGFKRDANLRMHMRAHGDEYKTSAALSNPMKNDESWKKREDFPPRKYSCPQEGCRWNRKHAKFQPLKSMICVKNHYKRSHCPKMYICKRCNQKQFSVLSDLKTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHSPLLSSVMKQRESERQTVDYS | 317 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 3046297 | 3047299 | + | Bda030773.1 | Bda09g00221 | 12471 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda09g00221 | 317 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 155 | 175 | IPR013087 | - | |
| Bda09g00221 | 317 | MobiDBLite | consensus disorder prediction | 113 | 132 | - | - | |
| Bda09g00221 | 317 | Pfam | Zinc-finger double-stranded RNA-binding | 153 | 173 | IPR022755 | - | |
| Bda09g00221 | 317 | SMART | c2h2final6 | 153 | 175 | IPR013087 | - | |
| Bda09g00221 | 317 | SMART | c2h2final6 | 206 | 239 | IPR013087 | - | |
| Bda09g00221 | 317 | SMART | c2h2final6 | 244 | 266 | IPR013087 | - | |
| Bda09g00221 | 317 | Gene3D | Classic Zinc Finger | 147 | 207 | - | - | |
| Bda09g00221 | 317 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 9 | 312 | IPR044300 | GO:0010044|GO:0010447 | |
| Bda09g00221 | 317 | PANTHER | OS08G0562300 PROTEIN | 9 | 312 | - | - | |
| Bda09g00221 | 317 | Gene3D | Classic Zinc Finger | 242 | 292 | - | - | |
| Bda09g00221 | 317 | SUPERFAMILY | beta-beta-alpha zinc fingers | 151 | 178 | IPR036236 | - | |
| Bda09g00221 | 317 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 153 | 180 | IPR013087 | - | |
| Bda09g00221 | 317 | MobiDBLite | consensus disorder prediction | 71 | 98 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda07g00650 | Bda09g00221 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda09g00221 | Bda-Chr9:3046297 | Bda12g01070 | Bda-Chr12:42429856 | 8.19E-25 | dispersed | |
| Bda11g01137 | Bda-Chr11:11545511 | Bda09g00221 | Bda-Chr9:3046297 | 4.56E-23 | dispersed | |
| Bda09g00221 | Bda-Chr9:3046297 | Bda09g00222 | Bda-Chr9:3048395 | 0 | tandem | |
| Bda04g00096 | Bda-Chr4:2079616 | Bda09g00221 | Bda-Chr9:3046297 | 7.27E-71 | transposed | |
| Bda11g00845 | Bda-Chr11:8325063 | Bda09g00221 | Bda-Chr9:3046297 | 2.98E-81 | transposed | |
| Bda07g00650 | Bda-Chr7:7837680 | Bda09g00221 | Bda-Chr9:3046297 | 3.29E-168 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 16361 | None | None | None | None | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda09g00221 | - | - | csin:114301238 | 378.252 |