Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00222 ATGATTTCAGAGGTAGAATCATCCTTCCCGAACGCATCTCTCCATTACAGTCTCTCCATTCTCAAAGAAAAGGTTCATCAGATTGAATCAGTGATTACCCTCTTTATCTCTCAAGATCAAACCCACTACGATTCATCGTCTCTGCCAATCTCCACCATAAACTCGCTGATTCAAGAAATCGTCTTCACTGCGTCTTCCATGCTGGTAACTTCTCAGCAAACGCCTCCTTCTGGTTCAAACCCTCGTAATATGATCGACCCGGATGAATTCCCCCATCATCGCCGTTTTTCCTTTCACCGGACCTCCGACGGAAGCCATGGCCAAGAATTCAATCCGAACGAGACGACGTCGGTTGATTGGTATGCACCAGAAAGCTTCAACAATGGCGGGACATCAAATAATTGTCAGAATTTCGAAAAAAAGAAAGAAGAGAATCAAAATCGCTCTCCTAAGCATTACGATATAATAGAATTACAGGCTGCAGACTTGTTAGCTAAGTACACCCATTACTGCCAAGTCTGTGCAAAAGGGTTCAAACGAGATGCAAATTTGAGAATGCACATGAGGGCCCATGGCGACGAGTATAAAACCAGTGCAGCTTTAAGCAACCCAATGAAAAACGACGAAAGTTGGAAGAAGAGAGAGGATTTTCCGCCGAGAAAATACTCCTGCCCGCAGGAAGGTTGCCGGTGGAATCGAAAGCACGCAAAGTTTCAGCCTCTGAAGTCGATGATTTGCGTGAAGAATCATTATAAGAGAAGCCACTGCCCTAAAATGTACATATGCAAGAGGTGCAACCAGAAGCAATTTTCAGTTCTGTCTGATTTGAAGACCCATGAGAAGCACTGCGGAGATCTGAAATGGCAGTGTTCTTGCGGAACTACGTTTTCCAGAAAAGATAAGTTAATGGGTCATGTTGCTTTGTTTGTGGGTCATTCGCCGTTGCTGAGTTCTGTGATGAAGCAGAGAGAGTCTGAAAGACAAACTGTAGATTACAGCTAG 1002 44.31 MISEVESSFPNASLHYSLSILKEKVHQIESVITLFISQDQTHYDSSSLPISTINSLIQEIVFTASSMLVTSQQTPPSGSNPRNMIDPDEFPHHRRFSFHRTSDGSHGQEFNPNETTSVDWYAPESFNNGGTSNNCQNFEKKKEENQNRSPKHYDIIELQAADLLAKYTHYCQVCAKGFKRDANLRMHMRAHGDEYKTSAALSNPMKNDESWKKREDFPPRKYSCPQEGCRWNRKHAKFQPLKSMICVKNHYKRSHCPKMYICKRCNQKQFSVLSDLKTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHSPLLSSVMKQRESERQTVDYS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3048395 3049396 + Bda030774.1 Bda09g00222 12472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00222 333 MobiDBLite consensus disorder prediction 86 102 - -
Bda09g00222 333 MobiDBLite consensus disorder prediction 103 123 - -
Bda09g00222 333 SUPERFAMILY beta-beta-alpha zinc fingers 167 194 IPR036236 -
Bda09g00222 333 MobiDBLite consensus disorder prediction 71 123 - -
Bda09g00222 333 Gene3D Classic Zinc Finger 160 223 - -
Bda09g00222 333 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Bda09g00222 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 196 IPR013087 -
Bda09g00222 333 PANTHER OS08G0562300 PROTEIN 9 328 - -
Bda09g00222 333 Gene3D Classic Zinc Finger 258 308 - -
Bda09g00222 333 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 9 328 IPR044300 GO:0010044|GO:0010447
Bda09g00222 333 SMART c2h2final6 169 191 IPR013087 -
Bda09g00222 333 SMART c2h2final6 260 282 IPR013087 -
Bda09g00222 333 SMART c2h2final6 222 255 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00650 Bda-Chr7:7837680 Bda09g00222 Bda-Chr9:3048395 7.26E-173 dispersed
Bda09g00222 Bda-Chr9:3048395 Bda11g00845 Bda-Chr11:8325063 4.74E-80 dispersed
Bda09g00221 Bda-Chr9:3046297 Bda09g00222 Bda-Chr9:3048395 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16362 None None None None Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00222 - - qsu:111988431 380.948