Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00228 ATGGCTCTGAATCCATGGCCGCATTTCCTTCAAGTTCCAGTTCACTCGATCTATTCATCGTCTCACTGTCTACTTTACGCCGACGCTGTCTCTGTATCAAGCTTTTTTTCTCAACATGCAAGTCTTCCTTCTCTGACTGCCGCGCGGAGCGGGGTCTCGTTGGTCCCAACTGTAGTGAAGGCCTCGTCCAGAGTGAAACGTTTCGCTAAGTCCACAGAGGAGGAGAAGTTAAGTGGATCGGAAATTCTAGCTGCCGAAGTTGTCGGAAGGAGTGAGCTTGACGATGAGAGTACCGCTCCATATCAGAGTTCGGAATCCGTTACTCTTCCTGCGCAGAGGATTCTTCCGTCATCGTTGAGTGATTCACTTTTGCTTGGGATTCGAGAGCCGGTTTATGAGGTGGTAGAAGTGAAATCAAATGGATCGGTATCCACTCAAAAGATTAACAGGCGTCAGTTGTTAAAGTTGAGTGGACTTCGCCCCCGTGATATCCGGAGTGTAGATCCTTCTTTGTTTTTGACAAACTCGATGCCTTCATTGGTGGTTCGTGAGCATGCTATTTTGCTTAATCTGGGATCTTTGCGAGCGATAGCAATGAAGGAGTGTGTCCTCATATTTGACTATAACCGTAAAGGAGGGCAAGCTTTTATTGAGTCACTATTGCCTCGGTTGAACCCAAAAAGCACGAATGGGGGGCCATCAATGCCATTTGAACTTGAGGTTGTTGAAGCAGCATTGCTGTCACGAACACAGAGGTTAGAGCAGAGACTAATGAATGTAGAACCTCGTGTTCAAGCTCTACTTAAGGTTTTGCCTACCAAATTAACTGCTGATGTATTGGAACAACTTCGCATTAGCAAGCAGACCTTGGTTGAACTGGGATCCAGAGCAGGGGCACTCAGACAAATGTTGCTTGATCTTTTGGAGGATCCTCATGAAATACGTCGCATTTGCATCATGGGGAGAAACTGTACATTGAAGAAAGGAAGTGAAGATGTTGAGTGTTCTGTCCCTCTAGAAAAACAAATTGCTGACGAAGAAGAGGAAGAAATTGAGATGCTTCTGGAAAATTATCTTCAAAGGTGCGAATCTTGTCATGGTCAGGCTGAAAGACTTCTGGACTCTGCAAAAGAAATGGAAGATTCTATTGCTGTCAATTTGAGCTCAAGGAGGTTGGAGGTCAGCAGAGTCGAACTACTTCTTCAAGTAGGGACATTTTGTGTGGCAGTTGGTGCTTTAGTTGCAGGTATCTTTGGCATGAACTTAAGGTCATATCTTGAGGAGCATGTGATTGCCTTTTGGACTACTACAGCAGGGATCATAGTTGGCGGTATTGTGGCATTTTTACTCATGTATTATTATCTCAGGCAAGAAGGGTATTATAAGGAAATTCGATTAAGGTAA 1404 44.66 MALNPWPHFLQVPVHSIYSSSHCLLYADAVSVSSFFSQHASLPSLTAARSGVSLVPTVVKASSRVKRFAKSTEEEKLSGSEILAAEVVGRSELDDESTAPYQSSESVTLPAQRILPSSLSDSLLLGIREPVYEVVEVKSNGSVSTQKINRRQLLKLSGLRPRDIRSVDPSLFLTNSMPSLVVREHAILLNLGSLRAIAMKECVLIFDYNRKGGQAFIESLLPRLNPKSTNGGPSMPFELEVVEAALLSRTQRLEQRLMNVEPRVQALLKVLPTKLTADVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPHEIRRICIMGRNCTLKKGSEDVECSVPLEKQIADEEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLRSYLEEHVIAFWTTTAGIIVGGIVAFLLMYYYLRQEGYYKEIRLR 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3077204 3081754 - Bda030780.2 Bda09g00228 12478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00228 467 CDD Mrs2_Mfm1p-like 134 456 IPR039204 -
Bda09g00228 467 Coils Coil 341 361 - -
Bda09g00228 467 Gene3D Magnesium transport protein CorA, transmembrane region 209 392 - -
Bda09g00228 467 Gene3D - 127 208 - -
Bda09g00228 467 Pfam CorA-like Mg2+ transporter protein 343 456 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Bda09g00228 467 PANTHER MG2+ TRANSPORTER PROTEIN, CORA-LIKE/ZINC TRANSPORT PROTEIN ZNTB-RELATED 43 457 - -
Bda09g00228 467 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 43 457 IPR039204 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00228 K16075 MRS2, MFM1; magnesium transporter - pvy:116140250 600.512
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00228 Bda-Chr9:3077204 Bda11g01176 Bda-Chr11:12156585 2.27E-10 dispersed
Bda09g00228 Bda-Chr9:3077204 Bda12g00562 Bda-Chr12:9654647 1.45E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1134 . Blo03g01303 . . . Bpe08g01293 . Bma07g01468 . . . . . . . . . Bhi08g00115 . . . . . . . . . . . . . . . Cone18ag0237 Cone11ag1343 . . . . . . . Bda09g00228 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme12g00517
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda12g00562 . 1 443 MRS2 Gene Family AT1G16010 82.7 1.8e-198 688.7
Bda05g00496 . 1 442 MRS2 Gene Family AT1G16010 76.7 4.1e-182 634.4
Bda11g01176 . 36 420 MRS2 Gene Family AT1G16010 57.0 1.9e-115 412.9
Bda08g00266 . 6 415 MRS2 Gene Family AT5G64560 71.0 3.5e-150 528.1
Bda06g01175 . 15 502 MRS2 Gene Family AT3G19640 61.8 6.1e-147 517.7
Bda06g01174 . 15 502 MRS2 Gene Family AT3G19640 62.1 7.5e-145 510.8
Bda06g01157 . 39 501 MRS2 Gene Family AT3G19640 64.5 7.5e-145 510.8
Bda06g01165 . 39 499 MRS2 Gene Family AT3G19640 64.6 1.1e-143 506.9
Bda11g01176 . 11 420 MRS2 Gene Family AT2G03620 64.3 7.5e-133 470.7
Bda12g00562 . 9 443 MRS2 Gene Family AT2G03620 52.5 8.0e-111 397.5
Bda05g00496 . 6 442 MRS2 Gene Family AT2G03620 50.3 1.7e-105 379.8
Bda08g00266 . 6 357 MRS2 Gene Family AT5G09690 68.0 1.2e-119 426.4
Bda12g00562 . 50 379 MRS2 Gene Family AT5G09690 51.7 3.2e-75 278.9
Bda08g00266 . 26 293 MRS2 Gene Family AT5G09720 67.6 1.1e-90 330.1
Bda12g00562 . 1 443 MRS2 Gene Family AT1G80900 82.4 7.7e-197 683.3
Bda05g00496 . 1 442 MRS2 Gene Family AT1G80900 75.8 1.5e-179 625.9
Bda11g01176 . 36 420 MRS2 Gene Family AT1G80900 56.6 7.4e-115 411.0
Bda09g00228 . 41 441 MRS2 Gene Family AT5G22830 70.7 5.1e-151 531.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004489 1 3 0 1 1 1 3 1 1 1 1 1 2 1 2 3 1 2 2 1 2 1 1 1 1 2 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00228 Bda_Chr09 FPKM 2.238506 3.171621 9.518007 9.707327 8.258565 8.892845 9.704909 33.829308 34.722206