Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00275 ATGGGGGTTTCTGGGAAATGGATAAGAGCACTTGTTGGTTTAAAGAAATCTGAAAAATCACAATCTTCTGAAAAAAATCAAAACAAGACACCTGGTGGCAAGTTCAGACATCAGAGAAAGCACTCTCTTGAGGTTGATGCAGATAAACTTCGGGCCGAATTGGATTCAAATAGCAGCACATTAGTTGGGGATGCTAATACTCATACTGATCGATATCCTGCTGGTTTGCCTTCAAATTCGCTTCATTTACTTGACATTTCACAGAATCCTCAGAATGAAAGAGAAAAGTTGGCTGCTATACGAATCCAAACAACCTTTCGAGGATTTCTGGCTAGGAGAGCTCTCAGAGCTTTGAAAGGATTAGTGAGGCTTCAAGCTCTTGTCAGGGGTCATGCTGTCAGAAAGCAAGCAGCAATTACACTACGATGTATGCAAGCTTTAGTGAGAGTTCAAGCTCGGGTCAGAGCAAGGCGTGTTCGTCTCGCATTAGAAAGTGAAACTTCTCAACAAAAGCTTCAACAACAACTTGAAAATGAGGCTCGTGTGAGAGAAATAGAGGAAGGGTGGTGCGACAGTGTAGGATCTGTTGAAGAGATTCAAGCCAAGCTGTTAAAGAGGCAGGAGGCTGCAGCCAAGCGCGAGAGAGCCATGGCATATGCTATGGCTCATCAGTGGCAAGCAAGTTCGAGGCAGCAAACTGCTCCATCCGGGTTTGAACCAGATAAAAACAGCTGGGGTTGGAATTGGTTGGAAAGATGGATGGCCGTTCGTCCTTGGGAAAATCGTTTTCTTGACATTAATCTCCGAGATGGAGTGATGATAATAGAGAAAGAATCGGCGGAGGCTAGAAATAACACTGGATCTCAGTTAAAAGGTAGTGGGAAGAAGCCAAACGTTTCAACTGCACAATCTAACCTCTCAAACCAGAAAACACGCCCGTCTAATTCTGAAGGTTCCAGTTCTTCTCCCAGTAAATCAGCAGGCATGGTAGAGCCAATGGCTGCCCCTGCCCAGTTCTCAAACCCAAAGTCCAAGCCTTCTCATGCAAAGACCGCCGAAGAAGTCAAAAAACCAGTTGTTGGATCAAGATCCGTTAGTAACCCAAAAGAGCGATCCACTCAATTTGAGAAACAGGCGAAAAAGCGGCTATCTCTGCCTAATAGTGGAACTTCCGTCTCTAATTTAGTGATGAATTCGAGCCGACATGGAGGCAAATCCAGCACCAGCTCTCTCAAACCCATCAAAGATAAGTCTAAGCTTGACGGAAAAGGCGAAGAAAAGGTCATAAAATCCATCCCACTCGCCGTTGATCAGCAGAGCTGA 1323 45.05 MGVSGKWIRALVGLKKSEKSQSSEKNQNKTPGGKFRHQRKHSLEVDADKLRAELDSNSSTLVGDANTHTDRYPAGLPSNSLHLLDISQNPQNEREKLAAIRIQTTFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALESETSQQKLQQQLENEARVREIEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYAMAHQWQASSRQQTAPSGFEPDKNSWGWNWLERWMAVRPWENRFLDINLRDGVMIIEKESAEARNNTGSQLKGSGKKPNVSTAQSNLSNQKTRPSNSEGSSSSPSKSAGMVEPMAAPAQFSNPKSKPSHAKTAEEVKKPVVGSRSVSNPKERSTQFEKQAKKRLSLPNSGTSVSNLVMNSSRHGGKSSTSSLKPIKDKSKLDGKGEEKVIKSIPLAVDQQS 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3420580 3424522 - Bda030831.1 Bda09g00275 12525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00275 440 PANTHER IQ-DOMAIN 5-RELATED 2 392 - -
Bda09g00275 440 MobiDBLite consensus disorder prediction 283 327 - -
Bda09g00275 440 SMART iq_5 117 138 IPR000048 GO:0005515
Bda09g00275 440 SMART iq_5 94 116 IPR000048 GO:0005515
Bda09g00275 440 MobiDBLite consensus disorder prediction 14 42 - -
Bda09g00275 440 Gene3D - 92 144 - -
Bda09g00275 440 ProSiteProfiles IQ motif profile. 119 146 IPR000048 GO:0005515
Bda09g00275 440 MobiDBLite consensus disorder prediction 379 411 - -
Bda09g00275 440 MobiDBLite consensus disorder prediction 412 430 - -
Bda09g00275 440 ProSiteProfiles IQ motif profile. 95 123 IPR000048 GO:0005515
Bda09g00275 440 Pfam IQ calmodulin-binding motif 98 116 IPR000048 GO:0005515
Bda09g00275 440 MobiDBLite consensus disorder prediction 283 440 - -
Bda09g00275 440 PANTHER IQ-DOMAIN 5-RELATED 2 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00275 - - - pvy:116125522 510.375
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01331 Bda-Chr1:48956185 Bda09g00275 Bda-Chr9:3420580 5.95E-31 dispersed
Bda03g01731 Bda-Chr3:56756295 Bda09g00275 Bda-Chr9:3420580 5.81E-47 dispersed
Bda04g00916 Bda-Chr4:58942813 Bda09g00275 Bda-Chr9:3420580 3.50E-06 dispersed
Bda05g00781 Bda-Chr5:56268286 Bda09g00275 Bda-Chr9:3420580 4.27E-33 dispersed
Bda07g01935 Bda-Chr7:36845393 Bda09g00275 Bda-Chr9:3420580 1.87E-31 dispersed
Bda09g00275 Bda-Chr9:3420580 Bda15g00176 Bda-Chr15:4321536 2.22E-41 dispersed
Bda09g00275 Bda-Chr9:3420580 Bda05g01241 Bda-Chr5:60300088 1.96E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g808 Blo03g01027 . . . . . Bma14g00379 Bma07g01423 Cmo10g00895 Cmo11g00931 Cma10g00857 . . . . . Cpe18g00165 . . . . . . . . . . . . . . . Cone5ag1312 Cone18ag0162 Cone11ag1428 Lsi06g00645 . . . . . . Bda09g00275 . Bpe11g00883 . Bma11g00338 . . . Cma11g00912 . . . . . . . . . . . . Cla03g01384 Cam03g1463 Cec03g1500 Cco03g1495 Clacu03g1486 Cmu03g2044 Cre03g1715 . Csa01g03281 Chy02g01601 Cme02g00846
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00176 . 1 458 IQD Protein Family AT3G52290 53.3 6.3e-95 344.7
Bda10g00517 . 6 248 IQD Protein Family AT3G52290 59.7 2.2e-55 213.4
Bda09g00275 . 1 418 IQD Protein Family AT3G22190 55.1 3.6e-95 345.5
Bda01g00627 . 1 395 IQD Protein Family AT2G26180 53.0 1.1e-91 334.0
Bda02g00019 . 1 274 IQD Protein Family AT2G33990 51.1 2.4e-60 229.2
Bda05g00781 . 2 162 IQD Protein Family AT2G33990 50.9 2.7e-40 162.5
Bda05g00781 . 1 173 IQD Protein Family AT3G15050 56.1 3.2e-49 192.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00275 Bda_Chr09 FPKM 13.53528 13.463388 13.004282 11.585629 19.566978 14.79297 22.840185 21.88652 24.143412