Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda09g00309 | ATGGGTTCCATGAATACAAATAATTGGCTTTCTTTCCCACTCTCACCAACTCACTCTTCTTTACCAATCCACCTCCAATCCACTCAGCCCCATCAGTTCTCTCTAGGGCTAGTGAATGATTCAATGGAAAACCCATTTAACACCCAAGATTGGAACTTGATTACTAACCAAGGAGGAAATGAAGTTCCAAAGGTGGCTGATTTTCTTGGGGTTACCAAATCAGAAAATCAATCAGATCTAGCGGTTTTTAATGAGATCCAGTCAAATGATTCAGACTATCTATATCCAAACAACAGCATAGTTCCTCTTCAAAACACCATGGCTGATTTCCAAGAAAGCTCTAGCCATTTGCAGTCCTTGACTTTGTCAATGGGGAGTGGAAATAAAGGCTCGGCAGCATGTGAAAATAGCGAAAACAGCACAAACAGTATTGTTGAGGCAACTCCGAGAAGAACTTTGGAGACTTTCGGCCAAAGAACTTCAATTTATCGTGGGGTTACAAGGCATAGATGGACAGGAAGATATGAAGCTCATCTTTGGGATAATAGTTGTAGAAGGGAAGGACAATCAAGAAAGGGTCGTCAAGGTGGGTATGACAAAGAAGATAAAGCAGCCAGAGCTTATGATCTTGCTGCGCTGAAATATTGGGGAACATCAACGACCACCAATTTCCCAGTGAGCAATTATGAAAAAGAAGTGGAAGAGATGAAGCACATGACGAGACAAGAATTTGTAGCTTCCATTAGAAGGAAGAGTAGTGGCTTTTCTAGAGGCGCATCCATCATGTTCATCTGTGTTAACAGGCATCATCAACATGGAAGATGGCAGGCGAGAATAGGAAGAGTTGCTGGAAACAAAGATCTTTACTTGGGAACGTTCAGTACCGAGGAAGAAGCTGCAGAAGCATACGATATTGCAGCCATAAAATTTCGAGGCCTAAATGCAGTGACAAACTTCGACATGAATCGGTACGACGTGAAGAGTATTTTGGAAAGCAATACTCTCCCCATCGGAGGAGGAGCAGCCAAAAGATTGAAAGAAGCTCAGGCTTTTGAATCAACGAGAAAACGAGAAGAAATGATAGCATTAGGTTCAAGCTTTAGCTATGGCGCCGCCAGTGGATCTTCAACTAGACTTCCTCTTCAATCTTACCCTCTTCTTCAGCAATCTTTTGAGCATTCTCAGCCCTTGATTTCTCTGCAAAATCAAGAAATCTCTCATTTTTCTCAAGACCCATCGTCGCTGCAGCAGAGTTATCTTCATCAGCTTCACTTTCATCATCAGAACTCTGGTTTTTATGCAAATCCATTTGGCCAAAGTTCTCAATTCTTCAATGGGTATGTTCAGAATAATCACCCAGGTTTACTTCACGGTTCTGGATCATCTTCTTCGTCTGTAATCATGGAGAATAATAACTATGGCGGAGGAATATATAATCTCGGAAATGGAGTTCCAATGGCGTCGGTTTCTTCCTCTAATGGCGGTGGAGTGAGATCTGCAGAAGAACTGGCTCTTGTTAAGGTGGATTATGACATGGTTCCTGGAGGCTATGGAGGTTGGTCCACTGATCATCAGGCTAACAATGGAGTTTTCTCAATGTGGAATGATGGCTGA | 1614 | 42.44 | MGSMNTNNWLSFPLSPTHSSLPIHLQSTQPHQFSLGLVNDSMENPFNTQDWNLITNQGGNEVPKVADFLGVTKSENQSDLAVFNEIQSNDSDYLYPNNSIVPLQNTMADFQESSSHLQSLTLSMGSGNKGSAACENSENSTNSIVEATPRRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGTSTTTNFPVSNYEKEVEEMKHMTRQEFVASIRRKSSGFSRGASIMFICVNRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKSILESNTLPIGGGAAKRLKEAQAFESTRKREEMIALGSSFSYGAASGSSTRLPLQSYPLLQQSFEHSQPLISLQNQEISHFSQDPSSLQQSYLHQLHFHHQNSGFYANPFGQSSQFFNGYVQNNHPGLLHGSGSSSSSVIMENNNYGGGIYNLGNGVPMASVSSSNGGGVRSAEELALVKVDYDMVPGGYGGWSTDHQANNGVFSMWNDG | 537 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3852688 | 3855117 | + | Bda030872.1 | Bda09g00309 | 12559 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda09g00309 | 537 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 | 8 | 535 | - | - | |
Bda09g00309 | 537 | CDD | AP2 | 161 | 227 | IPR001471 | GO:0003700|GO:0006355 | |
Bda09g00309 | 537 | ProSiteProfiles | AP2/ERF domain profile. | 255 | 320 | IPR001471 | GO:0003700|GO:0006355 | |
Bda09g00309 | 537 | SUPERFAMILY | DNA-binding domain | 268 | 321 | IPR016177 | GO:0003677 | |
Bda09g00309 | 537 | CDD | AP2 | 268 | 320 | IPR001471 | GO:0003700|GO:0006355 | |
Bda09g00309 | 537 | PRINTS | Ethylene responsive element binding protein signature | 163 | 174 | IPR001471 | GO:0003700|GO:0006355 | |
Bda09g00309 | 537 | PRINTS | Ethylene responsive element binding protein signature | 302 | 322 | IPR001471 | GO:0003700|GO:0006355 | |
Bda09g00309 | 537 | SUPERFAMILY | DNA-binding domain | 161 | 227 | IPR016177 | GO:0003677 | |
Bda09g00309 | 537 | SMART | rav1_2 | 162 | 231 | IPR001471 | GO:0003700|GO:0006355 | |
Bda09g00309 | 537 | SMART | rav1_2 | 266 | 326 | IPR001471 | GO:0003700|GO:0006355 | |
Bda09g00309 | 537 | ProSiteProfiles | AP2/ERF domain profile. | 162 | 225 | IPR001471 | GO:0003700|GO:0006355 | |
Bda09g00309 | 537 | Gene3D | AP2/ERF domain | 262 | 322 | IPR036955 | GO:0003700|GO:0006355 | |
Bda09g00309 | 537 | Gene3D | AP2/ERF domain | 162 | 227 | IPR036955 | GO:0003700|GO:0006355 | |
Bda09g00309 | 537 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 8 | 535 | - | - | |
Bda09g00309 | 537 | Pfam | AP2 domain | 264 | 312 | IPR001471 | GO:0003700|GO:0006355 | |
Bda09g00309 | 537 | Pfam | AP2 domain | 162 | 217 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda07g00737 | Bda-Chr7:8698315 | Bda09g00309 | Bda-Chr9:3852688 | 0 | dispersed | |
Bda07g01133 | Bda-Chr7:13478377 | Bda09g00309 | Bda-Chr9:3852688 | 5.57E-127 | dispersed | |
Bda09g00309 | Bda-Chr9:3852688 | Bda10g00018 | Bda-Chr10:354206 | 5.22E-09 | dispersed | |
Bda09g00309 | Bda-Chr9:3852688 | Bda03g00160 | Bda-Chr3:1319585 | 3.55E-101 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16367 | PF00847 | AP2 | 1.60E-08 | CL0081 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda09g00309 | K09285 | - | pop:7478340 | 746.117 |