Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00309 ATGGGTTCCATGAATACAAATAATTGGCTTTCTTTCCCACTCTCACCAACTCACTCTTCTTTACCAATCCACCTCCAATCCACTCAGCCCCATCAGTTCTCTCTAGGGCTAGTGAATGATTCAATGGAAAACCCATTTAACACCCAAGATTGGAACTTGATTACTAACCAAGGAGGAAATGAAGTTCCAAAGGTGGCTGATTTTCTTGGGGTTACCAAATCAGAAAATCAATCAGATCTAGCGGTTTTTAATGAGATCCAGTCAAATGATTCAGACTATCTATATCCAAACAACAGCATAGTTCCTCTTCAAAACACCATGGCTGATTTCCAAGAAAGCTCTAGCCATTTGCAGTCCTTGACTTTGTCAATGGGGAGTGGAAATAAAGGCTCGGCAGCATGTGAAAATAGCGAAAACAGCACAAACAGTATTGTTGAGGCAACTCCGAGAAGAACTTTGGAGACTTTCGGCCAAAGAACTTCAATTTATCGTGGGGTTACAAGGCATAGATGGACAGGAAGATATGAAGCTCATCTTTGGGATAATAGTTGTAGAAGGGAAGGACAATCAAGAAAGGGTCGTCAAGGTGGGTATGACAAAGAAGATAAAGCAGCCAGAGCTTATGATCTTGCTGCGCTGAAATATTGGGGAACATCAACGACCACCAATTTCCCAGTGAGCAATTATGAAAAAGAAGTGGAAGAGATGAAGCACATGACGAGACAAGAATTTGTAGCTTCCATTAGAAGGAAGAGTAGTGGCTTTTCTAGAGGCGCATCCATCATGTTCATCTGTGTTAACAGGCATCATCAACATGGAAGATGGCAGGCGAGAATAGGAAGAGTTGCTGGAAACAAAGATCTTTACTTGGGAACGTTCAGTACCGAGGAAGAAGCTGCAGAAGCATACGATATTGCAGCCATAAAATTTCGAGGCCTAAATGCAGTGACAAACTTCGACATGAATCGGTACGACGTGAAGAGTATTTTGGAAAGCAATACTCTCCCCATCGGAGGAGGAGCAGCCAAAAGATTGAAAGAAGCTCAGGCTTTTGAATCAACGAGAAAACGAGAAGAAATGATAGCATTAGGTTCAAGCTTTAGCTATGGCGCCGCCAGTGGATCTTCAACTAGACTTCCTCTTCAATCTTACCCTCTTCTTCAGCAATCTTTTGAGCATTCTCAGCCCTTGATTTCTCTGCAAAATCAAGAAATCTCTCATTTTTCTCAAGACCCATCGTCGCTGCAGCAGAGTTATCTTCATCAGCTTCACTTTCATCATCAGAACTCTGGTTTTTATGCAAATCCATTTGGCCAAAGTTCTCAATTCTTCAATGGGTATGTTCAGAATAATCACCCAGGTTTACTTCACGGTTCTGGATCATCTTCTTCGTCTGTAATCATGGAGAATAATAACTATGGCGGAGGAATATATAATCTCGGAAATGGAGTTCCAATGGCGTCGGTTTCTTCCTCTAATGGCGGTGGAGTGAGATCTGCAGAAGAACTGGCTCTTGTTAAGGTGGATTATGACATGGTTCCTGGAGGCTATGGAGGTTGGTCCACTGATCATCAGGCTAACAATGGAGTTTTCTCAATGTGGAATGATGGCTGA 1614 42.44 MGSMNTNNWLSFPLSPTHSSLPIHLQSTQPHQFSLGLVNDSMENPFNTQDWNLITNQGGNEVPKVADFLGVTKSENQSDLAVFNEIQSNDSDYLYPNNSIVPLQNTMADFQESSSHLQSLTLSMGSGNKGSAACENSENSTNSIVEATPRRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGTSTTTNFPVSNYEKEVEEMKHMTRQEFVASIRRKSSGFSRGASIMFICVNRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKSILESNTLPIGGGAAKRLKEAQAFESTRKREEMIALGSSFSYGAASGSSTRLPLQSYPLLQQSFEHSQPLISLQNQEISHFSQDPSSLQQSYLHQLHFHHQNSGFYANPFGQSSQFFNGYVQNNHPGLLHGSGSSSSSVIMENNNYGGGIYNLGNGVPMASVSSSNGGGVRSAEELALVKVDYDMVPGGYGGWSTDHQANNGVFSMWNDG 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3852688 3855117 + Bda030872.1 Bda09g00309 12559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00309 537 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 8 535 - -
Bda09g00309 537 CDD AP2 161 227 IPR001471 GO:0003700|GO:0006355
Bda09g00309 537 ProSiteProfiles AP2/ERF domain profile. 255 320 IPR001471 GO:0003700|GO:0006355
Bda09g00309 537 SUPERFAMILY DNA-binding domain 268 321 IPR016177 GO:0003677
Bda09g00309 537 CDD AP2 268 320 IPR001471 GO:0003700|GO:0006355
Bda09g00309 537 PRINTS Ethylene responsive element binding protein signature 163 174 IPR001471 GO:0003700|GO:0006355
Bda09g00309 537 PRINTS Ethylene responsive element binding protein signature 302 322 IPR001471 GO:0003700|GO:0006355
Bda09g00309 537 SUPERFAMILY DNA-binding domain 161 227 IPR016177 GO:0003677
Bda09g00309 537 SMART rav1_2 162 231 IPR001471 GO:0003700|GO:0006355
Bda09g00309 537 SMART rav1_2 266 326 IPR001471 GO:0003700|GO:0006355
Bda09g00309 537 ProSiteProfiles AP2/ERF domain profile. 162 225 IPR001471 GO:0003700|GO:0006355
Bda09g00309 537 Gene3D AP2/ERF domain 262 322 IPR036955 GO:0003700|GO:0006355
Bda09g00309 537 Gene3D AP2/ERF domain 162 227 IPR036955 GO:0003700|GO:0006355
Bda09g00309 537 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 535 - -
Bda09g00309 537 Pfam AP2 domain 264 312 IPR001471 GO:0003700|GO:0006355
Bda09g00309 537 Pfam AP2 domain 162 217 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00737 Bda-Chr7:8698315 Bda09g00309 Bda-Chr9:3852688 0 dispersed
Bda07g01133 Bda-Chr7:13478377 Bda09g00309 Bda-Chr9:3852688 5.57E-127 dispersed
Bda09g00309 Bda-Chr9:3852688 Bda10g00018 Bda-Chr10:354206 5.22E-09 dispersed
Bda09g00309 Bda-Chr9:3852688 Bda03g00160 Bda-Chr3:1319585 3.55E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16367 PF00847 AP2 1.60E-08 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00309 K09285 - pop:7478340 746.117