Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda09g00338 | ATGGCAGGGGAATCTTCCGATCAGAACTCGAGCATTCCGATTTCTCCGTCCGATTCTCCCACATCGGCTGACTTCAATACTGATCAGCTTCCTTTCACTAGCCACACATCCAACAACTACTCCGACGAAGAGGAGGCGGCGGTCGATCCTGATATTATTCTTGATGAGCCAAATGATGCTGAAGAAGAAGTCGAGGAGGACGGAGAGGATCTCTACAACGATAATTTTATGGACGATTACCGGAGGATGGAGGAACATGACCAATATGAATCCCTGGGTCTTAATGACTCTTTGGAAGACGAGAGAGATTTGGATCAAATTATGGAAGATCGAAGGGCTGCTGAATTGGAGCTCGACGCACGAGATGGTCGCTCCACCCAGCGCAAACTTCCACAGCTACTTCATGATAATGACTCTGAGGATGACAACTCTAGGCCGCCAAAGAGAGCTAGGGCTTCTAGGCCTTCAGCTGCAGCAAGAAGTTATGATGATGTTGATGGAATGCGAAGTTCACCTGGAAGGTCACAGCAAGATCATTCTAGAGACGATATCCCCATGACTGATCATTCAATTGATGAACAGTATGAGGATGAAGATGACGATGAAGGTGAGTTTGAAATGTATAGGGTCCAAGGAACTCTACGAGAGTGGGTAACTAGGGATGAAGTTCGTCGCTTCATTAGCAAGAAATTCAAAAATTTCTTAGAAACATATGTGAATCCAAAAAATGGACATTCTGAGCTCGTATACATGCGGCTCATAAATGAGATGGTGTTGGCTAACAGTAGTAGCTTGGAGGTAGATTATAAGCAGTTTATTTATGTACATCCAAATATTGCCATCTGGTTGGCTGATGCCCCACAATCTGTCCTAGAAGTCATGGAAGAAGTTGCAAAGAAGGTAGTATTTGACATACATCCTAATTACAAGAGTATTCACCAGAAGATCTATGTGAGGATAACCAACTTACCTGTATATGATCAGATTCGAAACATAAGGCAAATCCACTTGAATACCATGATTCGTATTGGAGGGGTTGTGACTCGCCGATCAGGTGTTTTTCCCCAGCTGCAGCAGGTCAAATATGATTGCAACAAATGTGGGGCAATATTAGGGCCCTTTTTCCAGAATTCGTATTCAGAAGTCAAGGTTGGTTCTTGCCCTGAATGCCAATCAAATGGGCCATTCACTGTTAATGTTGAACAGACTTTATACAGGAACTACCAGAAGCTTACGCTGCAAGAAAGCCCTGGTATTGTTCCTGCAGGTCGTCTTCCAAGATACAAGGAAGTGATATTGTTGAATGATCTGATTGATTGTGCCCGCCCCGGGGAAGAAATTGAAGTCACAGGAATTTATACGAATAACTTTGATTTATCTTTAAATACAAAGAATGGATTTCCTGTCTTTGCTACTGTTGTTGAAGCAAACTACGTTACCAAGAAGCAAGACCTCTTCTCTGCTTACAAACTTACTCAGGAAGACAAAGAAGAGATTGAAAAGCTTGCTAAAGATCCAAGAATTGGAGAAAGGATTATCAAATCTATTGCTCCATCAATATATGGCCACGAGGATATCAAAACGGCCATAGCTCTTTCTATGTTTGGTGGTCAAGAGAAGAATGTTGAGGGGAAACATCGGTTAAGAGGTGACATCAATGTACTTCTTCTTGGAGATCCAGGAACTGCGAAGTCACAATTTCTAAAATATGTTGAAAAGACTGGTCAAAGAGCAGTGTACACCACGGGCAAAGGAGCTTCTGCTGTTGGACTCACAGCAGCTGTGCACAAGGACCCAGTTACAAGGGAATGGACCCTTGAAGGAGGTGCCCTTGTTTTGGCTGATAGAGGAATTTGTCTTATTGATGAGTTTGACAAGATGAATGATCAAGATCGGGTGAGTATCCATGAAGCAATGGAGCAGCAAAGCATTAGTATATCGAAGGCTGGGATAGTCACTTCTCTTCAAGCACGTTGTGCCGTCATTGCTGCAGCTAATCCCATTGGAGGAAGTAAAGCATTCTTGTATTTAAAATGGATTCTTGTACATATTTTCAGGTATGATTCCTCAAAAACATTTACCCAGAATGTTGAGCTAACTGATCCTATCATTTCTCGTTTCGACATCCTATGTGTAGTGAAGGATGTCGTAGATCCTGTTATAGACGAGATGCTTGCCAAGTTTGTTGTTGATAGTCATTTTAAATCACAGCCTAAGGGTTCTAATGCTGAAGATAAGTCCAATATTGAGGAGTCTCAGGATGACATTCAAGACTCTGATAGGCCAGTTCATGTTGAGGTGCTGTCTCAAGATCTGCTTAGAAAATATATAACTTATGCTAAGTTAAATATTTTTCCAAGGTTGCATGGTACTGATATGGATAAGCTCACACACGTTTATGCTGAGCTGCGGCGCGAATCATCTCACGGACAAGGAGTTCCAATTGCAGTGAGACACATAGAATCAATGATACGAATGTCCGAGGCGCACGCAAGAATGCACCTCAGGCAGCATGTTACACAAGAAGATGTGGACATGGCAATTCGAGTACTTCTTGATTCATTCATTTCAACACAAAAATTTGGGGTTCAGAAAGCACTGCAAAAGAGCTTCAGAAAGTATATGACTTTCAAAAAGGATTACAATGAACTACTCCTGCATCTCCTCCGTGAGCTCGTGAAGAATGCATTGCACTCAAAGGAAATAGTTTCCGGTTCTGTTGCCGGACTTACCCATATTGATGTGAAAGTAGAGGATTTGCAAACCAAGGCACAGGAACACGAAATATATGATCTTAATCCTTTTTTCTCAAGTACTCATTTTTCTCGAGCCAACTTTACCTTGAATGAAGAACAAGGAGTAATTTACCATCGGCTTGCGCGATAA | 2886 | 42.13 | MAGESSDQNSSIPISPSDSPTSADFNTDQLPFTSHTSNNYSDEEEAAVDPDIILDEPNDAEEEVEEDGEDLYNDNFMDDYRRMEEHDQYESLGLNDSLEDERDLDQIMEDRRAAELELDARDGRSTQRKLPQLLHDNDSEDDNSRPPKRARASRPSAAARSYDDVDGMRSSPGRSQQDHSRDDIPMTDHSIDEQYEDEDDDEGEFEMYRVQGTLREWVTRDEVRRFISKKFKNFLETYVNPKNGHSELVYMRLINEMVLANSSSLEVDYKQFIYVHPNIAIWLADAPQSVLEVMEEVAKKVVFDIHPNYKSIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSNGPFTVNVEQTLYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTAIALSMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCAVIAAANPIGGSKAFLYLKWILVHIFRYDSSKTFTQNVELTDPIISRFDILCVVKDVVDPVIDEMLAKFVVDSHFKSQPKGSNAEDKSNIEESQDDIQDSDRPVHVEVLSQDLLRKYITYAKLNIFPRLHGTDMDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLHLLRELVKNALHSKEIVSGSVAGLTHIDVKVEDLQTKAQEHEIYDLNPFFSSTHFSRANFTLNEEQGVIYHRLAR | 961 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 4340736 | 4346089 | - | Bda030908.1 | Bda09g00338 | 12588 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda09g00338 | 961 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 637 | 650 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Bda09g00338 | 961 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 661 | 673 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Bda09g00338 | 961 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 549 | 564 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Bda09g00338 | 961 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 609 | 623 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Bda09g00338 | 961 | MobiDBLite | consensus disorder prediction | 115 | 202 | - | - | |
| Bda09g00338 | 961 | MobiDBLite | consensus disorder prediction | 738 | 760 | - | - | |
| Bda09g00338 | 961 | Pfam | MCM OB domain | 328 | 455 | IPR033762 | - | |
| Bda09g00338 | 961 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
| Bda09g00338 | 961 | MobiDBLite | consensus disorder prediction | 175 | 191 | - | - | |
| Bda09g00338 | 961 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 146 | 955 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Bda09g00338 | 961 | PANTHER | DNA HELICASE | 146 | 955 | - | - | |
| Bda09g00338 | 961 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 338 | 355 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Bda09g00338 | 961 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 472 | 483 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Bda09g00338 | 961 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 457 | 468 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Bda09g00338 | 961 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 396 | 410 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Bda09g00338 | 961 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 361 | 373 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Bda09g00338 | 961 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 518 | 858 | IPR027417 | - | |
| Bda09g00338 | 961 | Gene3D | - | 329 | 454 | IPR012340 | - | |
| Bda09g00338 | 961 | Pfam | MCM P-loop domain | 496 | 733 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Bda09g00338 | 961 | ProSitePatterns | MCM family signature. | 617 | 625 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Bda09g00338 | 961 | MobiDBLite | consensus disorder prediction | 735 | 760 | - | - | |
| Bda09g00338 | 961 | MobiDBLite | consensus disorder prediction | 44 | 73 | - | - | |
| Bda09g00338 | 961 | Gene3D | - | 488 | 878 | IPR027417 | - | |
| Bda09g00338 | 961 | MobiDBLite | consensus disorder prediction | 1 | 75 | - | - | |
| Bda09g00338 | 961 | Pfam | MCM N-terminal domain | 229 | 322 | IPR027925 | - | |
| Bda09g00338 | 961 | SMART | mcm | 325 | 856 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Bda09g00338 | 961 | MobiDBLite | consensus disorder prediction | 91 | 110 | - | - | |
| Bda09g00338 | 961 | CDD | MCM2 | 511 | 854 | - | - | |
| Bda09g00338 | 961 | Pfam | Mini-chromosome maintenance protein 2 | 43 | 200 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Bda09g00338 | 961 | MobiDBLite | consensus disorder prediction | 115 | 149 | - | - | |
| Bda09g00338 | 961 | SUPERFAMILY | Nucleic acid-binding proteins | 230 | 477 | IPR012340 | - | |
| Bda09g00338 | 961 | Gene3D | - | 221 | 325 | - | - | |
| Bda09g00338 | 961 | Gene3D | - | 356 | 406 | - | - | |
| Bda09g00338 | 961 | Pfam | MCM AAA-lid domain | 771 | 855 | IPR041562 | - | |
| Bda09g00338 | 961 | ProSiteProfiles | MCM family domain profile. | 508 | 729 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda02g00085 | Bda-Chr2:3920657 | Bda09g00338 | Bda-Chr9:4340736 | 1.24E-09 | dispersed | |
| Bda03g01734 | Bda-Chr3:56776528 | Bda09g00338 | Bda-Chr9:4340736 | 4.92E-15 | dispersed | |
| Bda05g00009 | Bda-Chr5:616526 | Bda09g00338 | Bda-Chr9:4340736 | 8.26E-77 | dispersed | |
| Bda09g00338 | Bda-Chr9:4340736 | Bda09g00764 | Bda-Chr9:13933455 | 4.28E-90 | dispersed | |
| Bda09g00338 | Bda-Chr9:4340736 | Bda14g00572 | Bda-Chr14:4347542 | 2.39E-92 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda09g00338 | K02540 | - | vvi:100266163 | 1556.19 |