Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00384 ATGGCGAAGGTGGCTCTTGGCTGTGAACCGGTGGTGGGTTCGTTGACTTCTTCCAAGAAGAAGGAGTACAGGGTCACCAACCGGCTCCAGGAAGGCAAGCGTCCACTTTATGCTGTCGTTTTTAATTTCATCGACTCCCGCTTCTTCAACGTAACGGTTTACCAATGTCTTGAAGGAGGTGTTATAGCTGTGTTGCAGTCTTACGTCGATGAAGATAAGGACGAGTCATTCTACACTGTGAGCTGGGCATGTAGTATCAATGGCATTCCGCTTGTCATTGCTGGAGGAATCAATGGCATAGTTCGTGTCATTGATGCTGGGAGTGAAAAGATACACAAGAGTTTTGTTGGTCATGGTGACTCGGTCAATGAAATTCGGACTCAACCGTTGAAACCATCACTTATTGTCTCTGCAAGTAAAGATGAATCTGTTCGACTATGGAATGTTCATACGGGTGTGTGCATTCTGATATTTGCTGGAGCTGGAGGTCATCGGAATGAGGTTTTGAGTGTGGATTTTCATCCTTCAGACATCTATCGCATTGCTAGCTGTGGAATGGACAATACTGTAAAAATTTGGTCAATGAAAGAGTTTTGGACATATGTAGAGAAGTCTTTCACTTGGACAGATCTTCCATCAAAATTTCCCACTAAGTATGTGCAGTTTCCAGTTTTCATAGCTTCGGTGCATTCAAACTATGTTGACTGTAATAGATGGCTTGGTGATTTTATTCTCTCCAAGAGCGTTGACAATGAAATAGTGTTGTGGGAAGCCAAAATGAAGGAACATTCACCTGGGGAGGGCTCCGTTGACATTCTTCAAAAATACCCCGTTCCCGAATGCGACATTTGGTTCATCAAGTTTTCATGCGATTTTCATTATAATGCAGCTGCCATAGTGACGGAGGTCTTGCTTAATATATGGCCTTATCCATCAGGAAATAGGGAAGGAAAGATATTTGTTTGGGAACTTCAATCCAGCCCTCCTGTTCTCATTGCAAGATTATCTCATGCTCAATCGAAATCGCCGATCAGACAGACGGCCATATCCTTTGATGGAAGCACCATTCTCAGCTGCTGTGAAGATGGGACCATCTGGCGTTGGGATGCTGCCACATCATCTTCTTGA 1128 43.97 MAKVALGCEPVVGSLTSSKKKEYRVTNRLQEGKRPLYAVVFNFIDSRFFNVTVYQCLEGGVIAVLQSYVDEDKDESFYTVSWACSINGIPLVIAGGINGIVRVIDAGSEKIHKSFVGHGDSVNEIRTQPLKPSLIVSASKDESVRLWNVHTGVCILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEAKMKEHSPGEGSVDILQKYPVPECDIWFIKFSCDFHYNAAAIVTEVLLNIWPYPSGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAISFDGSTILSCCEDGTIWRWDAATSSS 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4898875 4902310 - Bda030964.2 Bda09g00384 12634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00384 375 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 161 196 - -
Bda09g00384 375 PANTHER POLYCOMB PROTEIN 1 373 - -
Bda09g00384 375 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Bda09g00384 375 PRINTS G protein beta WD-40 repeat signature 181 195 IPR020472 -
Bda09g00384 375 PRINTS G protein beta WD-40 repeat signature 135 149 IPR020472 -
Bda09g00384 375 ProSiteProfiles Trp-Asp (WD) repeats profile. 161 196 IPR001680 GO:0005515
Bda09g00384 375 ProSiteProfiles Trp-Asp (WD) repeats profile. 115 157 IPR001680 GO:0005515
Bda09g00384 375 PANTHER BNAA05G20190D PROTEIN 1 373 - -
Bda09g00384 375 SMART WD40_4 108 148 IPR001680 GO:0005515
Bda09g00384 375 SMART WD40_4 220 257 IPR001680 GO:0005515
Bda09g00384 375 SMART WD40_4 151 194 IPR001680 GO:0005515
Bda09g00384 375 SMART WD40_4 328 369 IPR001680 GO:0005515
Bda09g00384 375 SMART WD40_4 73 105 IPR001680 GO:0005515
Bda09g00384 375 ProSitePatterns Trp-Asp (WD) repeats signature. 135 149 IPR019775 -
Bda09g00384 375 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 115 152 - -
Bda09g00384 375 Pfam WD domain, G-beta repeat 154 194 IPR001680 GO:0005515
Bda09g00384 375 Pfam WD domain, G-beta repeat 113 148 IPR001680 GO:0005515
Bda09g00384 375 SUPERFAMILY WD40 repeat-like 76 369 IPR036322 GO:0005515
Bda09g00384 375 Gene3D - 17 370 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00384 K11462 EED; polycomb protein EED - jre:108983540 694.501
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00384 Bda-Chr9:4898875 Bda10g00802 Bda-Chr10:42403642 2.77E-09 dispersed
Bda09g00384 Bda-Chr9:4898875 Bda05g00561 Bda-Chr5:53512719 7.19E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g432 . . . Bda09g00384 . Bpe08g01140 . . . . . . . Car09g00842 Sed04g3180 Cpe06g00746 . Bhi09g01944 Tan01g4508 Cmetu04g2640 . Hepe01g1309 . . . . . . . . . Cone6ag0087 Cone9ag0102 . . Lsi04g01241 . Chy04g01012 . . . . . . . Bma07g01314 . . . . . . . . . . . . . . . . . Cla05g01537 Cam05g1644 Cec05g1650 . Clacu05g1638 Cmu05g1533 Cre05g1643 . . . Cme04g00806
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011571 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00384 Bda_Chr09 FPKM 9.671489 9.878916 12.003654 12.514029 9.426885 8.243585 10.038112 8.749895 7.613511