Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00385 ATGTGCCGCAAAGCCAGAAGTTTAAGCGCTCTCTTCCTTTCTGCTGTTCAAACTTCCAAAACTTCCAAAACTTCCAAAACTGCCGCAGATGCAGACCTAAAATGCTTCGTTTCCTCCCTTGATCCATTATCTCCCAGCATCTCCCTTTCTGAAGCCATAACCCAACGCTCACTGATGTCTTTTAAGTCTAAGGACTTTCCGACACTCCCTGACGATTCTCGGCGTTCGATCTTTGAGGAACCGGCGGCCTTGGATTCTGGTTGGTTATTTTTGTGTTTCGAAGTGTTCTGTTTATCTGTTGAGAAAATTTCATCGCAACCGTCGGAGGATCTAATTTATTGGAAAAATGGTTTAGCCATACCATTGTTTTCAGATATGTCAAATAGTTATCTATCTTCATGTCGTAAAAAAATATCACGTGAAAGGAAAGAAAAGTGGATTCTCAAGAGCACTCAGCACAATCGATTTAATACATTGATGGGGAATTGTGCTCAGAAGCTGGGGACAGGCGCTACAATTGAGGTTTTTGCTAAATTACAACGTGAAACTGGTGAGAAAGAGTACAGTGCTTTAATAGGAATCTGCATAGATAAGGCTAGAACAACTAATGATGTGGAGGTTGGTTTTAAGTTAGAAGACAAAACTTATGGGCCAGTTCTTATGTTTTTTATTGAAATGGACATGATGAAAGAGTTCCAATGTTTCTCTGAGCTTCTAAAAAATGGATACCCAACTTCAGTTTCGAGGTTGGGTTACTATGAGATGTTGTTATTCGTCAGAACCAATGATACAATGAAAGTTCATGATCTCTGTAAGGATGTTTTAACCGAGGATGGGACAGATAGAACCAGTTTACGAGAAAACTACATGTTAGCTCTATCTGAAAATGGTTGGAAGGAGGAGTTTTTGATGCTGTTGGATACTACAGACTTAGAGTTCTCATCAGTGGATTATGTTGCTAACATCTTTAAATCCTTTGGAAGGCTCTCACTTGAAACTTTTGCGGAGAAACTCCTTTTGGAGGTCAAAACTAGCGAGCACGGAGAAGAGAATGTCTCAGACTTCATTCTTTGTTATGTTATTAGCATTCCAAATTTAGCGTTTGAGGATGCCATTTCAAAATTCAAGAACTTACATATCAAACTGGAGTTGAATCCATCATCTGCATCTTATGAGAAGCTCATAATCTTTTGCTGTGATTTTCTTGAGGTGCATTTGGCTCTTGATCTTGCTAAAGAAATGTGTGAAGCAGGTTTCATGCCCTCAGAGGATATGTTATGCTCCATTTTAGACGCCAGCGGGGAAAGTTATGAAATTAACTTGGTTCATCAAATCTATTCGATCATATGTAAATATGACTTAAAGCCAAATGGTGAAACCTTCAGGAGAATGATAAATTTGTGTGCGAGAATGAAAGATTTTGATGGTGCATATGGCATGCTCAAGGATTTGGAGAAAATGAACTTGACTCCTACAAGTGGCATGTACAATGCTATAATGGCAGGTTATTATCGAGAGAAAAACATTCTTGGTGGACTGATGGTTCTGAAACAAATGAAAGCTGCTCATGTAAAACCAGACTCTCAGACTTTCAGCTTGCTTCTCACCAACTGTTATCAAGAAGCCGACGTTAACAAGTATTATGAAGAACTGAAAACTTCTGGAATTCAAGTTACTAAACAAATCTTCATGGCTCTTGTAAATGCATATGCGAATTGTGGACAGTTTGAGAAGGCAAAACAGATAATATTAGACAAGAGAATCCCAGAAAAGAACTTGAATGAATTGAAAAATGTTCTTGTAAATTCTCTCGCTTCATGTGGTCAAGTGGATGATGCTCTCAGTGTTTACAACGAAATCAAACAAGCTGGCTGTGATCTTGAGCCTAAAGCGGTTATAAGCCTCATCGAGCACCTTCAAACTGATGGAGAATTAAGTATAATGCTTCAGCTCCTTGATGAGTTGAAGGATCTTCGTTACTGGATTGATGGTTGCAGTAGAGTTATTTTGTATTGTGTATTACATAAGCACTTAAGTTCGGCCATTGATCTTCTGAGGCAACTCGAGAACAATTTTTGCGAATATGAGCATGGCAAGGAAAGAATTTATGCTGAGGTATTTTGTTTCATTGCAGAGTTGGACCCAACATATTTAGAGGTTGGCCTGGAATTGCTACGAGTTATCAAGTGTGAATTTGGTCTGTCTCCTCCTCGAAAATGTCTCGATTTTCTTCTCAGCGCTTGTGTCGGTGCCAAAGACTTGGATAAGTCACGATTGATTTGGAAGGAATATAAATCAGCTGGCCTCCCTTACAATGTCATAAACTGTTTAAGGTTTATTAGGGAGCTTGTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCATCTCTATGCTTGAATATAACTATTTTTTTATGTATGGCTTAATATTTTAA 2451 38.88 MCRKARSLSALFLSAVQTSKTSKTSKTAADADLKCFVSSLDPLSPSISLSEAITQRSLMSFKSKDFPTLPDDSRRSIFEEPAALDSGWLFLCFEVFCLSVEKISSQPSEDLIYWKNGLAIPLFSDMSNSYLSSCRKKISRERKEKWILKSTQHNRFNTLMGNCAQKLGTGATIEVFAKLQRETGEKEYSALIGICIDKARTTNDVEVGFKLEDKTYGPVLMFFIEMDMMKEFQCFSELLKNGYPTSVSRLGYYEMLLFVRTNDTMKVHDLCKDVLTEDGTDRTSLRENYMLALSENGWKEEFLMLLDTTDLEFSSVDYVANIFKSFGRLSLETFAEKLLLEVKTSEHGEENVSDFILCYVISIPNLAFEDAISKFKNLHIKLELNPSSASYEKLIIFCCDFLEVHLALDLAKEMCEAGFMPSEDMLCSILDASGESYEINLVHQIYSIICKYDLKPNGETFRRMINLCARMKDFDGAYGMLKDLEKMNLTPTSGMYNAIMAGYYREKNILGGLMVLKQMKAAHVKPDSQTFSLLLTNCYQEADVNKYYEELKTSGIQVTKQIFMALVNAYANCGQFEKAKQIILDKRIPEKNLNELKNVLVNSLASCGQVDDALSVYNEIKQAGCDLEPKAVISLIEHLQTDGELSIMLQLLDELKDLRYWIDGCSRVILYCVLHKHLSSAIDLLRQLENNFCEYEHGKERIYAEVFCFIAELDPTYLEVGLELLRVIKCEFGLSPPRKCLDFLLSACVGAKDLDKSRLIWKEYKSAGLPYNVINCLRFIRELVSLSPLSLSLSLSSLSLISMLEYNYFFMYGLIF 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4905904 4913010 - Bda030965.1 Bda09g00385 12635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00385 816 TIGRFAM PPR: pentatricopeptide repeat domain 598 625 IPR002885 -
Bda09g00385 816 TIGRFAM PPR: pentatricopeptide repeat domain 495 528 IPR002885 -
Bda09g00385 816 Gene3D Tetratricopeptide repeat domain 590 785 IPR011990 GO:0005515
Bda09g00385 816 Pfam Pentacotripeptide-repeat region of PRORP 437 553 IPR033443 -
Bda09g00385 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Bda09g00385 816 Pfam PPR repeat 563 582 IPR002885 -
Bda09g00385 816 Pfam PPR repeat 598 625 IPR002885 -
Bda09g00385 816 PANTHER OS02G0132600 PROTEIN 3 785 - -
Bda09g00385 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Bda09g00385 816 Gene3D Tetratricopeptide repeat domain 435 559 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00385 - - - jre:108983570 820.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00385 Bda-Chr9:4905904 Bda13g01864 Bda-Chr13:42866410 1.90E-07 dispersed
Bda09g00385 Bda-Chr9:4905904 Bda06g00536 Bda-Chr6:7657055 8.23E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g434 . . . Bda09g00385 . Bpe08g01139 . . . . Cma01g01150 . . . . . Cpe02g00751 Bhi09g01943 . . . Hepe01g1308 . . . . . . . . . Cone6ag0086 . . . Lsi04g01240 . . . . . . . . . Bma07g01313 . . Cmo01g01202 . . . . Car16g00562 . . . . . . . . . Cla05g01536 Cam05g1643 Cec05g1649 Cco05g1687 Clacu05g1637 Cmu05g1532 Cre05g1642 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006190 1 2 0 1 1 1 1 1 1 1 1 1 1 0 2 2 1 1 1 1 1 5 1 2 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00385 Bda_Chr09 FPKM 5.189815 10.243901 8.382922 13.788616 12.910411 14.019058 10.320058 5.189551 6.766404