Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00398 ATGCGAAAGCTTCATCCGCTTCGTCCCGCGACTCCATATCCTGTATGTTTAGACGATCCCCTGTTCGTAATTTCTCGCTTATTCAGCAAATCTCTGCCGGAAAAGGATTACGACCCTCCATTTTCTCCGGTTACCAGACCTCCAAAGTCTCCCCAAAACAAGAAGAAAACCCAGGATGCCTCAATTACCAAGAAAGAGCCGCCTTCCCCTCTCGTCTCCGATCTTCCCTTCGACTTCAGATACTCCTACTCCGAGACCAACAACTTGGTCGACCCCATTGGATTCCGAGAATCGCCAAAGTTTTCCCCTTTCGGACCAAACCGGCTGGCCCGAAAATGGACAGGCACATCTGCGCCGTCGCAAGTCGACGCGGACAGCGACAAAGTTCAGGAAGACAGGAATCGTGTTCTTGGAGACCCACTCTCCGACGAGGAAGTTGCAGAGCTAGTTGAAAAATACCGCCATAACCACTGCTCTCGCCAAATCAATCTAGGAATAGGAGGTGTTACTCACAACATGCTAGATGACATCCATAACCATTGGAGAAGGGCCGAGGCAGTGAGGATCAAGGCGTTGGGGGTGCCTACTCTTGACATGGACAATGTCTGCTTCCACCTTGAGGATAAATCCGGCGGGAAGATTATCTATCGACATATAAACATCTTGCTTTTATATCGGGGTCGGAATTACGACTCCAAAACTCGGCCCGTTATTCCCCTCATGCTGTGGAAGCCTTACGCGCCGATATACCCGAAGCTCGTGAAGAAGGTTGTCGACGGATTAGCATTCGAGGAAATGAAGGAAATGAGGAACAGAGGACTGAACTCTCCCCCAATAATGAAACTCACAAGAAATGGGGTTTACGTAAATGTAGTGAGAAAACTGCAGGAAGCGTTCGAGTCGGAGGAAGTCATTCGACTGGATTGCACGTATGTTGGTAGCAGCGATTGCAAGAAGATAGGACTGAAATTAAGGGATCTTGTACCTTGCGTGCCTATTCTGTTCAAGGATGAGCAAATCATACTATGGTCGGGGAAGAAAGATCGGATCAAGGACTCCGACCAATCGAATGAAAAAGATGATACACCAATTTGCCCAGTTTACCAATGA 1110 48.38 MRKLHPLRPATPYPVCLDDPLFVISRLFSKSLPEKDYDPPFSPVTRPPKSPQNKKKTQDASITKKEPPSPLVSDLPFDFRYSYSETNNLVDPIGFRESPKFSPFGPNRLARKWTGTSAPSQVDADSDKVQEDRNRVLGDPLSDEEVAELVEKYRHNHCSRQINLGIGGVTHNMLDDIHNHWRRAEAVRIKALGVPTLDMDNVCFHLEDKSGGKIIYRHINILLLYRGRNYDSKTRPVIPLMLWKPYAPIYPKLVKKVVDGLAFEEMKEMRNRGLNSPPIMKLTRNGVYVNVVRKLQEAFESEEVIRLDCTYVGSSDCKKIGLKLRDLVPCVPILFKDEQIILWSGKKDRIKDSDQSNEKDDTPICPVYQ 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5016007 5017427 + Bda034091 Bda09g00398 12648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00398 369 Gene3D - 140 236 IPR035920 -
Bda09g00398 369 Gene3D - 261 360 IPR035920 -
Bda09g00398 369 ProSiteProfiles CRM domain profile. 259 355 IPR001890 GO:0003723
Bda09g00398 369 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 23 355 IPR044599 GO:0000373
Bda09g00398 369 SMART CRS1_YhbY_2 261 344 IPR001890 GO:0003723
Bda09g00398 369 SMART CRS1_YhbY_2 141 226 IPR001890 GO:0003723
Bda09g00398 369 MobiDBLite consensus disorder prediction 35 71 - -
Bda09g00398 369 Pfam CRS1 / YhbY (CRM) domain 264 343 IPR001890 GO:0003723
Bda09g00398 369 Pfam CRS1 / YhbY (CRM) domain 144 226 IPR001890 GO:0003723
Bda09g00398 369 SUPERFAMILY YhbY-like 141 236 IPR035920 -
Bda09g00398 369 PANTHER CRS2-ASSOCIATED FACTOR 2, MITOCHONDRIAL 23 355 - -
Bda09g00398 369 SUPERFAMILY YhbY-like 261 347 IPR035920 -
Bda09g00398 369 ProSiteProfiles CRM domain profile. 139 237 IPR001890 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00398 - - - csv:101214195 522.316
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00398 Bda-Chr9:5016007 Bda13g00420 Bda-Chr13:5138210 6.92E-112 dispersed
Bda14g01177 Bda-Chr14:11247194 Bda09g00398 Bda-Chr9:5016007 9.73E-06 dispersed
Bda09g00398 Bda-Chr9:5016007 Bda11g01095 Bda-Chr11:10722852 2.19E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g497 . Blo03g01448 . Bda09g00398 . Bpe08g01126 . . . . . Cma09g00946 . Car09g00860 . Cpe06g00762 . . . . . . . . . . . . . . . . . . . Lsi04g01206 . . . . . . . . . Bma07g01300 . . . Cmo09g00945 . . . . . . . . . . . . . Cla05g01493 Cam05g1609 . Cco05g1638 Clacu05g1589 Cmu05g1492 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010205 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00398 Bda_Chr09 FPKM 7.655838 11.138853 11.621132 12.528861 10.651582 8.521991 10.34847 12.932415 11.831275