Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda09g00403 | ATGCCTTCAGCTCAAGATCCATTCTACGTTGTGAAGGATGAAATCCAAGAATCTATTGATAAGTTGCAACAAACTTTTCACCGATGGGAGCTCATTTCTGATTTAGGAGAGCGATCAAAACTTACAAATGAGCTGCTTGCTAGCTGTGATAGTATTGAGTGGCAGGTAACCCATATATCTTCCACTCTATCAAGTACATTTTTATGGTGGAAGGTAGATGAATTAGACAAGGCTATAGCTGTTGCTGTCAGAGATCCGGCTTGGTATGGAATTGATGAAGTGGAGCTTGAAAAACGGAGAAGATGGACCAGTACAGCTCGCGCTCAGGTTGGCTCTGTGAAAAAGGCGGTGAAAACTGGGAAGGAGCTGCATGGTATTGGCAATACAACCACAAATATGAATGGAATACGTCGAGAACTGTTGAGACTGCCTAATTCTAATGAAGGAGACCGGGCCAACCAGTACGATGTTCAAGTTAATGATGATTTCATAGCTTCCGAATCAGATCGGCAGTTGCTTCTCATAAAGCGACAAGATGAAGAATTGGATGAGCTCAGTGCCAGCGTGGAGAGAATTGGAGGAGTTGGGCTAACAATACATGATGAACTCCTTGCCCAGGAGAAAATTATTGATGACTTAGGAACGGAACTGGATAGTACATCAAATCGTCTTGACTTTGTTCAGAAAAAAGTAGCCGTGGTCATGAAGAAGGCTGGTCTTAAGGGGCAGATAATGATGATTGCGTTTTTAGTGGTTTTGTTCATAATTCTCTTTGTGCTGGTGTTTTTAACTTAG | 795 | 42.26 | MPSAQDPFYVVKDEIQESIDKLQQTFHRWELISDLGERSKLTNELLASCDSIEWQVTHISSTLSSTFLWWKVDELDKAIAVAVRDPAWYGIDEVELEKRRRWTSTARAQVGSVKKAVKTGKELHGIGNTTTNMNGIRRELLRLPNSNEGDRANQYDVQVNDDFIASESDRQLLLIKRQDEELDELSASVERIGGVGLTIHDELLAQEKIIDDLGTELDSTSNRLDFVQKKVAVVMKKAGLKGQIMMIAFLVVLFIILFVLVFLT | 264 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 5049766 | 5052269 | - | Bda030983.2 | Bda09g00403 | 12653 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda09g00403 | 264 | Pfam | Syntaxin 6, N-terminal | 6 | 114 | IPR015260 | GO:0016020|GO:0048193 | |
Bda09g00403 | 264 | PANTHER | SYNTAXIN-61 | 1 | 263 | - | - | |
Bda09g00403 | 264 | Coils | Coil | 210 | 230 | - | - | |
Bda09g00403 | 264 | SUPERFAMILY | SNARE fusion complex | 171 | 234 | - | - | |
Bda09g00403 | 264 | SUPERFAMILY | t-snare proteins | 5 | 117 | IPR010989 | GO:0016020|GO:0016192 | |
Bda09g00403 | 264 | Gene3D | - | 2 | 63 | - | - | |
Bda09g00403 | 264 | Gene3D | - | 64 | 120 | - | - | |
Bda09g00403 | 264 | SMART | tSNARE_6 | 167 | 234 | IPR000727 | - | |
Bda09g00403 | 264 | PANTHER | SYNTAXIN | 1 | 263 | IPR045242 | - | |
Bda09g00403 | 264 | CDD | SNARE_Qc | 175 | 232 | - | - | |
Bda09g00403 | 264 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 172 | 234 | IPR000727 | - | |
Bda09g00403 | 264 | Pfam | SNARE domain | 209 | 260 | IPR000727 | - | |
Bda09g00403 | 264 | Gene3D | - | 179 | 241 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda09g00403 | Bda-Chr9:5049766 | Bda09g00411 | Bda-Chr9:5111043 | 2.37E-06 | proximal | |
Bda07g00367 | Bda-Chr7:4669492 | Bda09g00403 | Bda-Chr9:5049766 | 3.07E-135 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda09g00403 | K08500 | - | qsu:112025744 | 342.813 |