Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00403 ATGCCTTCAGCTCAAGATCCATTCTACGTTGTGAAGGATGAAATCCAAGAATCTATTGATAAGTTGCAACAAACTTTTCACCGATGGGAGCTCATTTCTGATTTAGGAGAGCGATCAAAACTTACAAATGAGCTGCTTGCTAGCTGTGATAGTATTGAGTGGCAGGTAACCCATATATCTTCCACTCTATCAAGTACATTTTTATGGTGGAAGGTAGATGAATTAGACAAGGCTATAGCTGTTGCTGTCAGAGATCCGGCTTGGTATGGAATTGATGAAGTGGAGCTTGAAAAACGGAGAAGATGGACCAGTACAGCTCGCGCTCAGGTTGGCTCTGTGAAAAAGGCGGTGAAAACTGGGAAGGAGCTGCATGGTATTGGCAATACAACCACAAATATGAATGGAATACGTCGAGAACTGTTGAGACTGCCTAATTCTAATGAAGGAGACCGGGCCAACCAGTACGATGTTCAAGTTAATGATGATTTCATAGCTTCCGAATCAGATCGGCAGTTGCTTCTCATAAAGCGACAAGATGAAGAATTGGATGAGCTCAGTGCCAGCGTGGAGAGAATTGGAGGAGTTGGGCTAACAATACATGATGAACTCCTTGCCCAGGAGAAAATTATTGATGACTTAGGAACGGAACTGGATAGTACATCAAATCGTCTTGACTTTGTTCAGAAAAAAGTAGCCGTGGTCATGAAGAAGGCTGGTCTTAAGGGGCAGATAATGATGATTGCGTTTTTAGTGGTTTTGTTCATAATTCTCTTTGTGCTGGTGTTTTTAACTTAG 795 42.26 MPSAQDPFYVVKDEIQESIDKLQQTFHRWELISDLGERSKLTNELLASCDSIEWQVTHISSTLSSTFLWWKVDELDKAIAVAVRDPAWYGIDEVELEKRRRWTSTARAQVGSVKKAVKTGKELHGIGNTTTNMNGIRRELLRLPNSNEGDRANQYDVQVNDDFIASESDRQLLLIKRQDEELDELSASVERIGGVGLTIHDELLAQEKIIDDLGTELDSTSNRLDFVQKKVAVVMKKAGLKGQIMMIAFLVVLFIILFVLVFLT 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5049766 5052269 - Bda030983.2 Bda09g00403 12653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00403 264 Pfam Syntaxin 6, N-terminal 6 114 IPR015260 GO:0016020|GO:0048193
Bda09g00403 264 PANTHER SYNTAXIN-61 1 263 - -
Bda09g00403 264 Coils Coil 210 230 - -
Bda09g00403 264 SUPERFAMILY SNARE fusion complex 171 234 - -
Bda09g00403 264 SUPERFAMILY t-snare proteins 5 117 IPR010989 GO:0016020|GO:0016192
Bda09g00403 264 Gene3D - 2 63 - -
Bda09g00403 264 Gene3D - 64 120 - -
Bda09g00403 264 SMART tSNARE_6 167 234 IPR000727 -
Bda09g00403 264 PANTHER SYNTAXIN 1 263 IPR045242 -
Bda09g00403 264 CDD SNARE_Qc 175 232 - -
Bda09g00403 264 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 172 234 IPR000727 -
Bda09g00403 264 Pfam SNARE domain 209 260 IPR000727 -
Bda09g00403 264 Gene3D - 179 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00403 Bda-Chr9:5049766 Bda09g00411 Bda-Chr9:5111043 2.37E-06 proximal
Bda07g00367 Bda-Chr7:4669492 Bda09g00403 Bda-Chr9:5049766 3.07E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00403 K08500 - qsu:112025744 342.813