Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00417 ATGAAAATGGATTCCTTCGATTCCTCAATGAACGGTATGACTGCCTTAATGCATTCTGGTATTGATTTCATTTTGGACCCTGTTTTCCTACGTGGGTTATCCGGTCTGTTGCACCTCGTCTTGTTATTTGGGTTATTTTTTCTCTGGGTGCGCAAAATATTGAAGCTGAATCGTGATGGAAGTCCAAAAGAAAGGTTTAGGAGCAGTGGGTGTTGGCTCGATAAGCTGACTTTTGCTTTGAGTCTCTGCTTTTCTGTTTTCAATCTTCTCTTTTGTTTTTTGAACTACTTTTATTGGTATAAAAATGGATGGTCTGAAGAAAATCTGGCGATACTTTTGGATATGGCTCTTAGAACTCTAGTTTGGTTTGCTGTTTCTGTTTATCTATATACCCAAGTTGGAAAAAAGCCACCTTTTGCATTGAGAGTTTGGTGGGGTTTCTTCTTCTCTCTTTCTTGTTATTACATTTTCATCGACTTCATGCGTCACAAAAAGCAAGGTTTTGTACCAGTACATGACATAGTTTTCGATGTTGTGTCGGCCATAAGTGGTCTATTCTTCTCTTGTATGGGGGTTTTAGGGAAAAGGGTGAGTGATCAAACAAAGCTTGAAGAACCACTTTTAAATGGTCATGTAGACGCCATTAATGAGTCTGGGAATTTTAAAGGGGACCAAACTGTTACCCCTTACTCGACTGCGGGAATTTTAAGTATTCTTTCCTTCTCTTGGATGGGTCCTCTAATTGCCACGGGCAATAAGAAGACATTAGACCTTGAGGATGTTCCTCAACTTTCCTGCAAAGATAGTGTCTCAGCGACTTATCCTGCGTTTCAAAATAAGCTCGAATCCGATTGTGGTAGAATTAATGGAATCACCACATTTAGTCTGGTGAAGGCATTGTTCTATTCTGCCTGGAGGGAGATACTTCTAACGGCACTTTTTGCCTGCCTCTACACTCTGGCTTCTTATGTAGGCCCTTATCTAATCGACACCTTCGTCCAATACCTCAACGGTACTCAGCAATTTGAAAATGAAGGCTATGTATTAGTAGCTGCATTTTTTGGTGCAAAGATTGTGGAGTGTCTCTCAATGAGACATTGGTTCTTTAGGCTGCAAGTGGTTGGAATTCGGATGAGAGCAGTTCTAAACGCAATAATATACAATAAAGCCTTGACCCTCTCGGGCCAATCCAAGCAGAAACACACGAGTGGAGAGATCATTAATTTTATGACTGTCGATGCAGAGAGGGTCGGGGAATTTAGTTGGTACATGCACGATTCATGGATGGTCCTTCTGCAGGTTTCTTTGGCCTTGTTGATTTTGTATAAGAATCTCGGGGTTGCTTCAGTTGTAACTTTTGCTGCGACTGTACTTGTTATGTTAGCGAATGTTCCTTTGGGGAAATTGCAAGAGAGGTACCAAGAGAAGATAATGGAGTCAAAAGATAATCGAATGAAGGCAACGTCCGAAATCTTGCGAAACATGAGGATACTCAAGCTTCAAGGATGGGAGATGAAGTTTCTCTCGAAAATTGTTGAGCTGAGGAAGGTCGAGGCGGGATGGTTGAAAAAATATCTTTACACTATGGCTATGACCTCATTTGTCTTCTGGGGGGCTCCCACATTTGTCTCTGTGGTGACTTTTGGTGCTTGTATTTTCATGGGGATCCCACTAGAATCTGGCAAAATTTTATCAGCTCTTGCAACTTTTAGAATTCTTCAAGAACCCATTTACAATCTTCCTGACACAATATCAATGATGGTTCAAACTAAAGTTTCTCTTGACAGAATTGTCTCCTTCCTTCGGCTTGACGACTTGCAAACTGATATCGTTGAGCAGCTTCCTACGGGTAGTTCTGATATGGCAGTTGAGATTGCAGATGGGAATTTCTCATGGGATTTATCTTCTCCAAATTCAACTCTTCAACATATTAACTTTAAAGTGTCCCGAGGTATGAGGGTTGCTATTTGTGGAACTGTAGGTTCCGGCAAGTCGAGCTTGCTTTCATGTATCTTAGGAGAGGTACCTAAGATTTCGGGAAGTCTTAAAGTTTGTGGAACCAAAGCATATGTAGCTCAGTCGCCTTGGATTCAAAGTGGAAAGATAGAAGAGAATATCTTGTTTGGTAAAGAGATGGACAGAAGGAAGTATGATAGGGTTCTTGAGGCTTGCTCACTGAAGAAAGACCTTGAAATTCTCTCTTTTGGCGATCAGACGGTGATTGGGGAGAGAGGGATAAATTTGAGTGGCGGGCAGAAGCAAAGAATACAAATTGCACGTGCTCTCTATCAAGACGCTGATATCTACTTGTTTGATGATCCGTTTAGTGCGGTTGATGCTCATACTGGTTCTCACCTCTTTAAGGAATGCTTACTCGGCCTTTTAAGTTCAAAAACAGTGATTTATATAACTCATCAAGTAGAATTCTTACCTGCTGCTGATCTTATCTTGGTAATGAAGGATGGAAAGATCACTCAAGCTGGAAAGTACAATGAAATTCTTGCTGCAGGAACTGATTTTATGGCACTCGTGGGTGCACACAAGGAAGCTCTGTCAGGACTTGATTCTGTAGATAGAGGGCCTGCTGTGGAAAACTTATCCAATACCACTGAAGATGTCAATGGTCTTGTTAGAGACGAAGAAAACGGAGATATTCAAGATGGTAAAGCAGAAGGTGAGGCTAAATCGAAAGGCCAGTTGGTTCAAGATGAAGAGAGAGAGAAAGGCAAAGTTGGGTTTGCAGTTTATTGGAAATATCTTACATCTTCATATGGAGGAGCTCTTGTGCCGTTTATACTACTCTCTCATATTCTCTTTCAGATTCTTCAAATTGGAAGCAATTACTGGATGGCTTGGGCATCTCCGGTTTCCGAGGATGTGAAGCCGAATGTCGAAGGTTCTAAACTTATTATCGTTTATGTGGCCCTGGCAATTGGAAGTTCTCTTTGTGTCCTTTCAAGAACAACACTTCTCGTCACTGCTGGCTATAATTCGGCGACTCTACTCTTCAACAAAATGCATCAATGCATTTTCCGAGCCCCCATGTCGTTTTTCGACTCGACGCCTAGTGGACGAATCTTGAACAGGGCTTCTACCGATCAAAGTGCAGTAGATATGGACATTCCATTTCGAGTTGGATCTTTCGCCTTTTCATTGATCCAACTTCTCGGAATTATTGCAGTAATGTCTCAGGTTGCTTGGCAGGTTTTCATTATTTTTGTCCCTGTAATTGCGCTATGTATTTGGTATCAGCAATATTATATTCCTTCGGCTAGAGAGCTAGCTCGTTTAGTTGGAGTCTGTAAAGCTCCGGTTATACAGCATTTTGCAGAAACGATTTCCGGGGCATCTACCATTAGGAGCTTCGACCAAGAATCAAGATTTAGAGACTTGAATATGAAGCTGATGGATGGGTATTCTCGGCCCAAGTTCAACAATGCAGGAGCAATGGAATGGCTCTGCTTTCGACTGGATATGTTATCGTCCATTACTTTCGCCTTTTCATTGATTTTCCTAGTCTCCATCCCTCGAGGAATTATCGATCCCGGCATTGCTGGCTTGGCCGTGACTTATGGACTTAACCTGAATATGCTACAAGCTTGGCTAATATGGAACCTGTGTAATATGGAAAACAAAATGATATCAGTGGAGAGAATACTGCAGTATGCTTCGATCCCTAGTGAGCCACCGTTGGTTGTCGAAGAAAACCAACCAGATAACGCGTGGCCATCGTGTGGAGAAGTTGAAATTCATGATCTACAGGTTCGATATGCACCACACTTGCCACTCGTGTTGCGAGGAATCTCGTGTACTTTCCCGGGAGGTAAAAAGGCTGGAATTGTTGGAAGAACAGGCAGTGGAAAATCTACTCTGATTCAGACACTTTTCCGGATAGTTGAACCAGCTGCCGGAGAAATAAAAATTGATAAAATCAATATCTCTTCAATTGGACTGCACGATTTGAGATTGAGGCTGAGCATTATTCCTCAGGATCCAACCATGTTTGAAGGGACCGTTCGAAGCAACTTGGACCCACTCGAAGAGTATACCGATGAACAAATTTGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAGTCAGGAAAAAAGAAGGAAAGCTAGATTCATCAGTCAGTGAGAATGGTGAGAACTGGAGTATGGGTCAGAGGCAACTCGTCTGCCTTGGCCGGGTTCTGCTGAAGAAAAGTCAGGTTTTGGTTCTCGATGAGGCTACTGCCTCGGTCGATACAGCTACCGATAATCTTATACAACAAACTCTCAGACAGCATTTTTCGAACTGCACCGTCATCGTAATTGCCCATCGAATTACTTCTGTTCTCGACAGTGACATGGTTCTTCTCCTCAATCACGGGCTCGTTGAGGAGTATGATTCGCCGACGAGATTGCTGGAGAACAAGTCTTCGGGTTTTGCTCAGCTTGTATCGGAGTATACTGTTAGGTCTAATACGAGTTTAGAGAAGTTTTAG 4488 42.38 MKMDSFDSSMNGMTALMHSGIDFILDPVFLRGLSGLLHLVLLFGLFFLWVRKILKLNRDGSPKERFRSSGCWLDKLTFALSLCFSVFNLLFCFLNYFYWYKNGWSEENLAILLDMALRTLVWFAVSVYLYTQVGKKPPFALRVWWGFFFSLSCYYIFIDFMRHKKQGFVPVHDIVFDVVSAISGLFFSCMGVLGKRVSDQTKLEEPLLNGHVDAINESGNFKGDQTVTPYSTAGILSILSFSWMGPLIATGNKKTLDLEDVPQLSCKDSVSATYPAFQNKLESDCGRINGITTFSLVKALFYSAWREILLTALFACLYTLASYVGPYLIDTFVQYLNGTQQFENEGYVLVAAFFGAKIVECLSMRHWFFRLQVVGIRMRAVLNAIIYNKALTLSGQSKQKHTSGEIINFMTVDAERVGEFSWYMHDSWMVLLQVSLALLILYKNLGVASVVTFAATVLVMLANVPLGKLQERYQEKIMESKDNRMKATSEILRNMRILKLQGWEMKFLSKIVELRKVEAGWLKKYLYTMAMTSFVFWGAPTFVSVVTFGACIFMGIPLESGKILSALATFRILQEPIYNLPDTISMMVQTKVSLDRIVSFLRLDDLQTDIVEQLPTGSSDMAVEIADGNFSWDLSSPNSTLQHINFKVSRGMRVAICGTVGSGKSSLLSCILGEVPKISGSLKVCGTKAYVAQSPWIQSGKIEENILFGKEMDRRKYDRVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVIYITHQVEFLPAADLILVMKDGKITQAGKYNEILAAGTDFMALVGAHKEALSGLDSVDRGPAVENLSNTTEDVNGLVRDEENGDIQDGKAEGEAKSKGQLVQDEEREKGKVGFAVYWKYLTSSYGGALVPFILLSHILFQILQIGSNYWMAWASPVSEDVKPNVEGSKLIIVYVALAIGSSLCVLSRTTLLVTAGYNSATLLFNKMHQCIFRAPMSFFDSTPSGRILNRASTDQSAVDMDIPFRVGSFAFSLIQLLGIIAVMSQVAWQVFIIFVPVIALCIWYQQYYIPSARELARLVGVCKAPVIQHFAETISGASTIRSFDQESRFRDLNMKLMDGYSRPKFNNAGAMEWLCFRLDMLSSITFAFSLIFLVSIPRGIIDPGIAGLAVTYGLNLNMLQAWLIWNLCNMENKMISVERILQYASIPSEPPLVVEENQPDNAWPSCGEVEIHDLQVRYAPHLPLVLRGISCTFPGGKKAGIVGRTGSGKSTLIQTLFRIVEPAAGEIKIDKINISSIGLHDLRLRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSSVSENGENWSMGQRQLVCLGRVLLKKSQVLVLDEATASVDTATDNLIQQTLRQHFSNCTVIVIAHRITSVLDSDMVLLLNHGLVEEYDSPTRLLENKSSGFAQLVSEYTVRSNTSLEKF 1495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5209911 5215484 + Bda030997.1 Bda09g00417 12667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00417 1495 Gene3D - 1231 1484 IPR027417 -
Bda09g00417 1495 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1248 1482 IPR003439 GO:0005524
Bda09g00417 1495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 620 845 IPR027417 -
Bda09g00417 1495 CDD ABC_6TM_ABCC_D2 929 1223 IPR044726 GO:0140359
Bda09g00417 1495 Pfam ABC transporter 641 775 IPR003439 GO:0005524
Bda09g00417 1495 Gene3D - 605 855 IPR027417 -
Bda09g00417 1495 SMART AAA_5 1274 1459 IPR003593 -
Bda09g00417 1495 SMART AAA_5 650 823 IPR003593 -
Bda09g00417 1495 Pfam ABC transporter 1265 1413 IPR003439 GO:0005524
Bda09g00417 1495 CDD ABCC_MRP_domain1 623 823 - -
Bda09g00417 1495 CDD ABCC_MRP_domain2 1246 1466 - -
Bda09g00417 1495 SUPERFAMILY ABC transporter transmembrane region 929 1229 IPR036640 GO:0005524|GO:0016021
Bda09g00417 1495 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 623 846 IPR003439 GO:0005524
Bda09g00417 1495 ProSitePatterns ABC transporters family signature. 748 762 IPR017871 GO:0005524
Bda09g00417 1495 Coils Coil 470 490 - -
Bda09g00417 1495 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bda09g00417 1495 SUPERFAMILY ABC transporter transmembrane region 299 597 IPR036640 GO:0005524|GO:0016021
Bda09g00417 1495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1240 1474 IPR027417 -
Bda09g00417 1495 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359
Bda09g00417 1495 MobiDBLite consensus disorder prediction 879 901 - -
Bda09g00417 1495 Gene3D ABC transporter type 1, transmembrane domain 287 604 IPR036640 GO:0005524|GO:0016021
Bda09g00417 1495 Gene3D ABC transporter type 1, transmembrane domain 891 1229 IPR036640 GO:0005524|GO:0016021
Bda09g00417 1495 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 931 1211 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bda09g00417 1495 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 106 1494 - -
Bda09g00417 1495 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 106 1494 - -
Bda09g00417 1495 Pfam ABC transporter transmembrane region 310 576 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bda09g00417 1495 Pfam ABC transporter transmembrane region 934 1174 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00417 - - K05666 zju:107433578 2231.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00468 Bda-Chr2:45539739 Bda09g00417 Bda-Chr9:5209911 0 dispersed
Bda04g00449 Bda-Chr4:52598141 Bda09g00417 Bda-Chr9:5209911 0 dispersed
Bda04g00904 Bda-Chr4:58831678 Bda09g00417 Bda-Chr9:5209911 0 dispersed
Bda07g01915 Bda-Chr7:36601765 Bda09g00417 Bda-Chr9:5209911 1.05E-10 dispersed
Bda09g00417 Bda-Chr9:5209911 Bda13g00452 Bda-Chr13:5488276 7.70E-14 dispersed
Bda12g00565 Bda-Chr12:9863769 Bda09g00417 Bda-Chr9:5209911 1.84E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g625 . Blo03g01469 . Bda09g00417 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g01855 . . Cme06g02771 . . . . . . Bma07g01268 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002483 1 1 1 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 1 1 3 2 2 3 2 1 3 6 6 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00417 Bda_Chr09 FPKM 5.057693 5.743866 0.143759 0.407034 6.637744 6.08283 6.918861 0.0 0.0