Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00422 ATGAAATTTTGCCGACCTAGCTTTTCCGATTCTTTGTCTTGCATCCCAATTTGCCATAGTCGGTCGAGGAACCTGTGTGCGAGTAAAATCAAGGAGGAGATTAATCGCGACTATAACGATGTCGATGCCGATCTTTGGCGGATAATCCAAGAAGAAGCTCGGGTTGATGTGGAGCAGGAGCCGATTTTATCAGACTTCTATTGCGATTCCATCTTTTCGCACAGTTCGTTGGAAAGTGCCCTAGCTAATCACCTAGCGATGAAATTGAGCAATTCCAGTCTTCCTCGGAACACCTTGTACGATCTGTTTCTCGAGGAATTGACGGAGGATGAAGAAATTTCTAGGGCAGTCAAGTATGATTTGAGAGCTGTGAAGGAGCGAGATCCAGCCTGCATAAGCTTCGTCCATTGTTTATTAAATTTCAAAGGCTTTCTGGCTGTTCAAGCGCATAGAGTTTCCCACAAATTATGGTCGCAAGGAAGAAAAGTCTTAGCTCACGTTATTCAAAACCGAGTCTCCGAGGTATTTGCCGTCGATATTCACCCCGGAGCAAAATTAGGAAGGGGTCTATTACTCGATCACGCCACCGGAGTCGTCGTCGGAGAGACGGCGATTATCGGAAACAATGTTTCAATTCTGCATAACGTGACTCTAGGAGGAACGGGCAAAGCTTCAGGAGACAGGCATCCGAAGATCGGCGACGGAGTTTTAATCGGGGCCGGAACTTGTATTTTAGGAAACATTAAGATCGGAGAAGGGGCTAAGATCGGCGCTGGGTCGGTGGTTTTGAAAGAAGTTCCACCAAGAACAACAGCAGTCGGAAATCCAGCAAGACTGGTGGGAGGAAAAGAGAATCCATTGAAGCTCGACAAAATCCCCAGTTTTACCATGGATCACACATCTTACATATGTGAGTGGTCTAACTATGTAATATAA 936 45.83 MKFCRPSFSDSLSCIPICHSRSRNLCASKIKEEINRDYNDVDADLWRIIQEEARVDVEQEPILSDFYCDSIFSHSSLESALANHLAMKLSNSSLPRNTLYDLFLEELTEDEEISRAVKYDLRAVKERDPACISFVHCLLNFKGFLAVQAHRVSHKLWSQGRKVLAHVIQNRVSEVFAVDIHPGAKLGRGLLLDHATGVVVGETAIIGNNVSILHNVTLGGTGKASGDRHPKIGDGVLIGAGTCILGNIKIGEGAKIGAGSVVLKEVPPRTTAVGNPARLVGGKENPLKLDKIPSFTMDHTSYICEWSNYVI 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5373589 5374524 + Bda031003.1 Bda09g00422 12672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00422 311 Pfam Bacterial transferase hexapeptide (six repeats) 229 263 IPR001451 -
Bda09g00422 311 Gene3D Hexapeptide repeat proteins 179 298 - -
Bda09g00422 311 TIGRFAM cysE: serine O-acetyltransferase 117 278 IPR005881 GO:0005737|GO:0006535|GO:0009001
Bda09g00422 311 Pfam Serine acetyltransferase, N-terminal 45 149 IPR010493 GO:0005737|GO:0006535|GO:0009001
Bda09g00422 311 SUPERFAMILY Trimeric LpxA-like enzymes 49 281 IPR011004 -
Bda09g00422 311 Gene3D serine acetyltransferase, domain 1 25 178 IPR042122 -
Bda09g00422 311 PANTHER SERINE ACETYLTRANSFERASE 2 311 - -
Bda09g00422 311 SMART SATase_N_2_a 45 149 IPR010493 GO:0005737|GO:0006535|GO:0009001
Bda09g00422 311 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 238 266 IPR018357 GO:0016740
Bda09g00422 311 CDD LbH_SAT 176 276 IPR045304 -
Bda09g00422 311 PANTHER SERINE O-ACETYLTRANSFERASE, SERINE ACETYLTRANSFERASE-RELATED 2 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00422 K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] - zju:107403319 459.914
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g00397 Bda09g00422 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00361 Bda-Chr2:43997819 Bda09g00422 Bda-Chr9:5373589 2.32E-133 transposed
Bda02g00391 Bda-Chr2:44436256 Bda09g00422 Bda-Chr9:5373589 8.78E-134 transposed
Bda04g00218 Bda-Chr4:8370775 Bda09g00422 Bda-Chr9:5373589 3.08E-97 transposed
Bda13g00981 Bda-Chr13:11424161 Bda09g00422 Bda-Chr9:5373589 6.74E-79 transposed
Bda07g00397 Bda-Chr7:4949489 Bda09g00422 Bda-Chr9:5373589 5.54E-157 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g635 Blo03g00516 Blo03g01477 Bda07g00397 Bda09g00422 . Bpe08g01100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00576 . Bma07g01254 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001381 4 9 3 1 3 1 3 2 2 1 1 1 2 3 2 3 1 6 3 2 2 2 1 2 2 2 2 3 3 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00422 Bda_Chr09 FPKM 1.90835 1.115958 1.029484 1.109458 0.737071 0.782292 0.476316 1.027341 1.352184