Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00446 ATGAAACGAAGCGCAGAGAGAGAAATCCAGCGAGAGAGAGAAAAGCAGACAGGCAGAAAGTACGTGAAAAAGAATGAGAAAGAGAGAGAGAGAGAGAGAGAGGAAGAGAATTGGAGGCTAAGCTTCGAAGGGTTCGAAGAGGAATTTGATCCTAATTTGGGGTCTGTTGAGGATGATATCATTGAACATCCCCCAGAGATTGTTGAGGACTTGAACTTAAACGAGAAGATTGCATTGCGGGGTGGAAGTAATGAGCAAGATGCCGAGCAAGTGGCCATCAAATCACTTGCAGCAAGAGCCTTGACCGTGGCTGAGCTGAGGAAAAAACTGCAACAAAAGAGGTTTTCTACTGAAACTGTGGACGATGTGCTCGATAATTTCAAGACCAGTGGGTTGATCAACGATAACTTGTATGCTGAAACATTTTCTCGCTCGAGATGGACTTCCTCGACTTGGGGACCCAGGAGAATCAAAAACGCATTGTTAAAGAAGGGGATCAGAGAAGTCGATGCAGAGAAAGCTGTAAAACTGATTTTTGAGGATGGCGAGCGGGGATCGAGAAGTGGGTTAGGCAAGAGCAAAAAAATTATGGATTTGTTGTTTCCCAAAATCACCCATAAGTGGGAGCACGGTTATTTATCTCCTCTCGCCGATCGATCGCTCAGATACGTTGTATGGATGCATTGTATAGAATTTTCTCTCTCTATAACCTCTTTTCTTTTTCGTTTTATTTTGTCGGTGTCTGAGGAAAGCTGA 756 43.92 MKRSAEREIQREREKQTGRKYVKKNEKEREREREEENWRLSFEGFEEEFDPNLGSVEDDIIEHPPEIVEDLNLNEKIALRGGSNEQDAEQVAIKSLAARALTVAELRKKLQQKRFSTETVDDVLDNFKTSGLINDNLYAETFSRSRWTSSTWGPRRIKNALLKKGIREVDAEKAVKLIFEDGERGSRSGLGKSKKIMDLLFPKITHKWEHGYLSPLADRSLRYVVWMHCIEFSLSITSFLFRFILSVSEES 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5867171 5881147 - Bda034097 Bda09g00446 12696

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00446 251 Gene3D - 134 177 IPR036388 -
Bda09g00446 251 Gene3D - 86 132 IPR036388 -
Bda09g00446 251 PANTHER REGULATORY PROTEIN RECX FAMILY PROTEIN 11 241 IPR003783 GO:0006282
Bda09g00446 251 MobiDBLite consensus disorder prediction 1 37 - -
Bda09g00446 251 Pfam RecX family 110 182 IPR003783 GO:0006282
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00446 - - - sind:105175002 168.703
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g726 . . . Bda09g00446 . Bpe08g01083 . . . . . . . Car09g00938 Sed07g2766 Cpe06g00840 . Bhi09g01817 Tan01g3232 Cmetu01g0567 . . Mch11g1311 . . . . . . . . . . . . Lsi02g01802 Csa07g01063 . . . . . . . . Bma07g01238 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013129 1 2 0 1 1 1 1 0 1 1 0 0 0 1 1 0 0 1 1 0 1 2 1 1 1 1 1 4 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00446 Bda_Chr09 FPKM 4.845144 5.486959 5.531948 3.716882 3.865958 3.307561 3.661707 5.34156 5.071667