Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00447 ATGGGTTCTACTTCAGTGGTGGATTTAATAGAGGCCTCCTCGGGGGTGCATTTTTCTGGACTGCACTTGAATAATGTGAAACAAATTAAAGAACTGGTGGATCACCTTTCAGAGTCAGCAACAGAAGACATAGATAACCAGCCTTTTGTAATTGGGGTTGCTGGGGGAGCCGCATCTGGTAAGACTACAGTTTGCGATATGATTATTCAGCAACTTCATGATCAGCGCGTCGTTCTTGTTAACCAGGACTCTTTCTATCATAACTTAACTCCAGAGGAACTCACAAGGGTAAACGAGTACAACTTTGACCATCCTGATGCATTCGACACAGAGCAACTTTTAAGATCGATGGAGGAGCTGAGGCATGGGCACCCTGTAAATATTCCAAACTATGATTTCAAGACTTACAAAAACGACGTATTTCCAGCAAGAATGGTTAACCCTTCGGATGTTATAATTTTGGAAGGAATACTTGTGTTTCATGACCCCCGTGTTCGAGAAATGATGAACATGAAGATATTTGTTGATACAGATGCCGATGTTCGTCTAGCTAGGAGAATAAGGCTTGATACTGTAGAGAAGGGTAGAGATATTAGTGCCATTCTCGATCAGTATTCAAAATTTGTTAAGCCAGCCTTTGATGACTTCATTCTTCCGACAAAGAAGTATGCTGATGTAATCATTCCCAGAGGCGGAGATAATCATGTTGCTATCGATTTAATTGTACAGCACATTTGTACAAAGCTTGGTCAACATGATCTCTGTAAAATATACTCTAACTTATATGTTATTCAATCAACTTTTCAGATAAGAGGAATGCATACCCTCATACGAGATGCTAAAACAACAAAGCATGATTTTGTCTTCTACTCTGACAGATTGATTCGTCTGGTTGTTGAGCATGGTCTGGGACACCTGCCGTTTACAGAAAAGCAGGTGCTCACCCCAACTGATTCTGTGTACTCTGGAGTTGATTTCTGTAAGAGACTATGTGGGGTCTCTGTCATCAGGAGTGGAGAAAGTATGGAGAATGCTTTACGAGCATGTTGTAAAGGTATCAAGATTGGGAAGATTCTTTTTCATAGGGAAGGAGATAATGGCCAGCAGTTAATTTATGAAAAATTACCTCAAGACATCTCAGATAGGCATGTATTGCTATTGGACCCAATCCTTGGCACAGGAAATTCGGCTGTCCAAGCAATTTCTTTACTCCTAAGGAAGGGTGTGCCAGAGACCAGCATTATATTTCTCAATCTCATTTCAGCACCTCAAGGTGTTCATGTGGTATGTAAAAGCTTTCCAAGAATAAAGATAGTGACATCTGAGATCGATATTGGCCTGAATGACGATTTTCGTGTCATACCTGGCATGGGTGAGTTTGGAGATCGATATTTTGGAACAGACGATGACAACCAAGGAGTGGAGGACCCCCATATATAA 1440 41.04 MGSTSVVDLIEASSGVHFSGLHLNNVKQIKELVDHLSESATEDIDNQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTPEELTRVNEYNFDHPDAFDTEQLLRSMEELRHGHPVNIPNYDFKTYKNDVFPARMVNPSDVIILEGILVFHDPRVREMMNMKIFVDTDADVRLARRIRLDTVEKGRDISAILDQYSKFVKPAFDDFILPTKKYADVIIPRGGDNHVAIDLIVQHICTKLGQHDLCKIYSNLYVIQSTFQIRGMHTLIRDAKTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVLTPTDSVYSGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILFHREGDNGQQLIYEKLPQDISDRHVLLLDPILGTGNSAVQAISLLLRKGVPETSIIFLNLISAPQGVHVVCKSFPRIKIVTSEIDIGLNDDFRVIPGMGEFGDRYFGTDDDNQGVEDPHI 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5882164 5887245 + Bda031036.1 Bda09g00447 12697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00447 479 PANTHER URIDINE KINASE-LIKE PROTEIN 3 18 469 - -
Bda09g00447 479 PANTHER URIDINE KINASE 18 469 - -
Bda09g00447 479 TIGRFAM udk: uridine kinase 47 248 IPR000764 -
Bda09g00447 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 241 IPR027417 -
Bda09g00447 479 Gene3D - 252 467 IPR029057 -
Bda09g00447 479 PRINTS Uridine kinase signature 180 190 - -
Bda09g00447 479 PRINTS Uridine kinase signature 48 65 - -
Bda09g00447 479 PRINTS Uridine kinase signature 123 138 - -
Bda09g00447 479 PRINTS Uridine kinase signature 194 205 - -
Bda09g00447 479 PRINTS Uridine kinase signature 78 89 - -
Bda09g00447 479 PRINTS Uridine kinase signature 216 229 - -
Bda09g00447 479 Pfam Phosphoribulokinase / Uridine kinase family 50 236 IPR006083 GO:0005524|GO:0016301
Bda09g00447 479 SUPERFAMILY PRTase-like 251 468 IPR029057 -
Bda09g00447 479 CDD UMPK 50 245 IPR000764 -
Bda09g00447 479 Gene3D - 44 251 IPR027417 -
Bda09g00447 479 CDD PRTases_typeI 325 440 IPR000836 -
Bda09g00447 479 Pfam Uracil phosphoribosyltransferase 266 467 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00447 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - vvi:100259975 837.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00447 Bda-Chr9:5882164 Bda14g00899 Bda-Chr14:7003994 3.00E-14 dispersed
Bda05g00954 Bda-Chr5:58040013 Bda09g00447 Bda-Chr9:5882164 3.98E-16 transposed
Bda13g01653 Bda-Chr13:39994696 Bda09g00447 Bda-Chr9:5882164 0 transposed
Bda07g00427 Bda-Chr7:5462010 Bda09g00447 Bda-Chr9:5882164 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda13g01256 BCT 33 188 PRT Gene Family AT1G80050 74.4 1.4e-63 239.2
Bda08g00567 . 30 180 PRT Gene Family AT1G80050 75.5 2.6e-62 235.0
Bda08g01357 . 27 177 PRT Gene Family AT1G80050 70.2 2.5e-57 218.4
Bda01g01004 BCT,CCT 33 156 PRT Gene Family AT1G80050 57.8 8.0e-43 170.2
Bda13g01256 BCT 1 148 PRT Gene Family AT5G11160 84.5 2.4e-66 248.4
Bda08g00567 . 8 145 PRT Gene Family AT5G11160 73.9 3.6e-54 208.0
Bda08g01357 . 5 142 PRT Gene Family AT5G11160 71.7 1.4e-53 206.1
Bda01g01004 BCT,CCT 1 118 PRT Gene Family AT5G11160 63.5 1.8e-42 169.1
Bda06g00037 CCT 8 119 PRT Gene Family AT5G11160 69.6 4.0e-37 151.4
Bda08g01357 . 4 179 PRT Gene Family AT1G27450 82.4 7.9e-79 290.0
Bda08g00567 . 7 181 PRT Gene Family AT1G27450 73.1 1.2e-71 266.2
Bda13g01256 BCT 11 183 PRT Gene Family AT1G27450 71.7 4.3e-69 257.7
Bda01g01004 BCT,CCT 11 153 PRT Gene Family AT1G27450 54.9 7.9e-47 183.7
Bda06g00037 CCT 7 119 PRT Gene Family AT1G27450 73.5 5.9e-42 167.5
Bda08g00974 . 90 573 PRT Gene Family AT2G16570 84.6 7.2e-240 826.6
Bda08g00971 . 65 522 PRT Gene Family AT2G16570 81.9 5.7e-221 763.8
Bda08g00974 . 90 573 PRT Gene Family AT4G34740 85.6 1.0e-241 832.8
Bda08g00971 . 67 522 PRT Gene Family AT4G34740 83.2 3.3e-221 764.6
Bda08g00974 . 91 546 PRT Gene Family AT4G38880 75.1 2.4e-197 685.3
Bda08g00971 . 60 520 PRT Gene Family AT4G38880 73.0 4.3e-194 674.5
Bda08g01357 . 4 179 PRT Gene Family AT1G27450 82.4 7.9e-79 290.0
Bda08g00567 . 7 181 PRT Gene Family AT1G27450 73.1 1.2e-71 266.2
Bda13g01256 BCT 11 183 PRT Gene Family AT1G27450 71.7 4.3e-69 257.7
Bda01g01004 BCT,CCT 11 153 PRT Gene Family AT1G27450 54.9 7.9e-47 183.7
Bda06g00037 CCT 7 119 PRT Gene Family AT1G27450 73.5 5.9e-42 167.5
Bda13g01256 BCT 33 188 PRT Gene Family AT1G80050 74.4 1.4e-63 239.2
Bda08g00567 . 30 180 PRT Gene Family AT1G80050 75.5 2.6e-62 235.0
Bda08g01357 . 27 177 PRT Gene Family AT1G80050 70.2 2.5e-57 218.4
Bda01g01004 BCT,CCT 33 156 PRT Gene Family AT1G80050 57.8 8.0e-43 170.2
Bda06g00037 CCT 5 98 PRT Gene Family AT4G22570 85.1 1.6e-44 175.3
Bda08g00567 . 5 97 PRT Gene Family AT4G22570 82.8 2.0e-42 168.3
Bda08g01357 . 4 94 PRT Gene Family AT4G22570 81.3 3.9e-38 154.1
Bda13g01256 BCT 11 100 PRT Gene Family AT4G22570 77.8 3.3e-37 151.0
Bda06g00037 CCT 1 96 PRT Gene Family AT4G12440 83.3 7.7e-41 162.9
Bda08g00567 . 1 96 PRT Gene Family AT4G12440 81.3 1.1e-39 159.1
Bda13g01256 BCT 1 148 PRT Gene Family AT5G11160 84.5 2.4e-66 248.4
Bda08g00567 . 8 145 PRT Gene Family AT5G11160 73.9 3.6e-54 208.0
Bda08g01357 . 5 142 PRT Gene Family AT5G11160 71.7 1.4e-53 206.1
Bda01g01004 BCT,CCT 1 118 PRT Gene Family AT5G11160 63.5 1.8e-42 169.1
Bda06g00037 CCT 8 119 PRT Gene Family AT5G11160 69.6 4.0e-37 151.4
Bda01g00859 . 1 186 PRT Gene Family AT1G71750 61.4 6.6e-63 237.3
Bda09g00447 . 16 470 PRT Gene Family AT1G55810 82.2 1.1e-219 759.2
Bda07g00427 . 28 502 PRT Gene Family AT1G55810 80.0 6.2e-218 753.4
Bda13g01653 . 61 483 PRT Gene Family AT1G55810 78.3 2.5e-195 678.3
Bda09g00447 . 67 474 PRT Gene Family AT3G27440 75.2 8.6e-182 633.3
Bda13g01653 . 81 483 PRT Gene Family AT3G27440 75.4 9.9e-178 619.8
Bda07g00427 . 79 509 PRT Gene Family AT3G27440 71.2 3.2e-176 614.8
Bda13g01653 . 1 483 PRT Gene Family AT3G27190 83.4 2.0e-235 811.6
Bda09g00447 . 3 469 PRT Gene Family AT3G27190 74.7 1.4e-207 719.2
Bda07g00427 . 15 501 PRT Gene Family AT3G27190 70.9 4.8e-200 694.1
Bda05g00954 . 1 235 PRT Gene Family AT3G53900 75.0 2.8e-102 368.6
Bda09g00447 . 1 470 PRT Gene Family AT4G26510 83.7 1.0e-231 799.3
Bda07g00427 . 13 502 PRT Gene Family AT4G26510 80.1 2.9e-226 781.2
Bda13g01653 . 11 483 PRT Gene Family AT4G26510 74.4 3.7e-205 711.1
Bda13g01653 . 1 483 PRT Gene Family AT5G40870 84.7 7.6e-238 819.7
Bda09g00447 . 3 472 PRT Gene Family AT5G40870 73.4 9.0e-207 716.5
Bda07g00427 . 15 504 PRT Gene Family AT5G40870 70.5 4.8e-200 694.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00447 Bda_Chr09 FPKM 3.30758 1.785508 1.169315 1.372656 2.50332 2.582172 3.820399 2.493141 3.260822