Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00449 ATGCTTCGGGTAAAGAACGACGCCTCAATTGTTGAGATTAAAGCGGCTTACCGGAGCTTGGCTAAGCTTTACCATCCCGACTCTATGCACCAACCGGGATCCGATGGTCACGATTTTATCCAGATTCACAACGCTTATGCTACGCTGTCCGATTCTTCGGCCAGATCTGTCTACGATTTGTCGCTGGAAAGCCGGAGGAGACGCGGGTTTGGTTTGTCGGTTGAGAACCAATCACGGTTTTACCCTGGTCGGAGATGGGAAACGAACCAGTGCTGGTAG 279 51.25 MLRVKNDASIVEIKAAYRSLAKLYHPDSMHQPGSDGHDFIQIHNAYATLSDSSARSVYDLSLESRRRRGFGLSVENQSRFYPGRRWETNQCW 92
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5909960 5910238 - Bda031038.1 Bda09g00449 12699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00449 92 ProSitePatterns Nt-dnaJ domain signature. 39 58 IPR018253 -
Bda09g00449 92 ProSiteProfiles dnaJ domain profile. 1 62 IPR001623 -
Bda09g00449 92 SMART dnaj_3 2 54 IPR001623 -
Bda09g00449 92 CDD DnaJ 2 51 IPR001623 -
Bda09g00449 92 SUPERFAMILY Chaperone J-domain 2 83 IPR036869 -
Bda09g00449 92 Pfam DnaJ domain 2 59 IPR001623 -
Bda09g00449 92 Gene3D DnaJ domain 1 82 IPR036869 -
Bda09g00449 92 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 2 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00449 - - - jre:108985808 124.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00449 Bda-Chr9:5909960 Bda10g00184 Bda-Chr10:6025964 1.05E-16 dispersed
Bda09g00449 Bda-Chr9:5909960 Bda14g00609 Bda-Chr14:4588985 2.21E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g748 . . . Bda09g00449 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1289 . . . . . . . . . . Bma07g01235 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004491 1 1 1 1 0 2 2 2 1 1 2 2 0 1 1 1 2 3 1 2 1 1 2 1 2 1 2 1 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00449 Bda_Chr09 FPKM 14.734784 14.087815 15.714095 14.611059 9.645864 9.86841 10.080823 16.076185 15.410169