Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00455 ATGGCTTCATCGTCTAGCAGTGGATTGACGTTCAAGCTGCACCCACTTGTTATAGTTAATATATCAGATCACTTTACGAGGGTTAAGTCTCAGACACAGCCACCCTCCACCACCACTTGTGTGCCCCACTCTTCCACTCTCAGCAACGGAGCTGATGCATTGGTTGTTGCATCTTCTTCCCTCATCTCACCCGCACCACGGGTTTACGGGTGCGTTATTGGAGTTCAGCGGGGCCGCACTGTTGAGATCTTCAATAGCTTTGAGCTTCTCTTTGATGCTTCTACTCACTCCCTTGACCGTGCCTTCCTCGAAAAGAAACAAGAGCTTTATAAGAAAGTTTTCCCTAATTTCTATGTCCTTGGTTGGTATTCCACTGGGAGTGATGCTCAAGAGTCTGACATGTATATCCATAAAGCTCTAATGGACATAAACGAAAGCCCTGTTTATGTTCTTCTTAACCCTTCAATAAATCCTGCGCAAAAGGATCTACCAGTAACCATTTATGAGAGTGAGCTTCACATTATTGACGGGATACCACAAGTGATTTTTGTTCAATCAAGCTACACAATAGAGACTGTAGAAGCTGAGAGGATCTCCGTAGATCACGTCGCACATCTTAAACCATCTGATGGGGGTTCTGCTGCTACTCAATGCGATATTCCTTGGGAGAATTCACTACTCAGACAAGTATCAAGTCTTCTTAGAAGATTACCTGTCATTGAATCGGGGAAATTTCAGGATGATTTCTTAATGGAGTGCAGTGACACACTGTTGATTGCATATCTGGCAATGATCACCAACTGCTCCAGCACGATGAACGAGCTTGTTGACAAATTCAATACTGCATATGACAGGCATACTCGAAGGGGAGGGCGAACTGCTTTTATGTAA 891 44.22 MASSSSSGLTFKLHPLVIVNISDHFTRVKSQTQPPSTTTCVPHSSTLSNGADALVVASSSLISPAPRVYGCVIGVQRGRTVEIFNSFELLFDASTHSLDRAFLEKKQELYKKVFPNFYVLGWYSTGSDAQESDMYIHKALMDINESPVYVLLNPSINPAQKDLPVTIYESELHIIDGIPQVIFVQSSYTIETVEAERISVDHVAHLKPSDGGSAATQCDIPWENSLLRQVSSLLRRLPVIESGKFQDDFLMECSDTLLIAYLAMITNCSSTMNELVDKFNTAYDRHTRRGGRTAFM 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5956307 5960306 - Bda031044.1 Bda09g00455 12705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00455 296 CDD MPN_CSN6 9 292 IPR033859 GO:0000338|GO:0008180
Bda09g00455 296 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 6A 218 296 - -
Bda09g00455 296 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 2 217 - -
Bda09g00455 296 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 6A 2 217 - -
Bda09g00455 296 Gene3D Cytidine Deaminase, domain 2 1 208 - -
Bda09g00455 296 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 146 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bda09g00455 296 ProSiteProfiles MPN domain profile. 46 174 IPR037518 -
Bda09g00455 296 Pfam Maintenance of mitochondrial structure and function 219 277 IPR024969 -
Bda09g00455 296 SMART pad1_6 10 173 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bda09g00455 296 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 218 296 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00455 K12179 COPS6, CSN6; COP9 signalosome complex subunit 6 - vvi:100246357 471.855
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00934 Bda-Chr5:57911411 Bda09g00455 Bda-Chr9:5956307 2.14E-14 dispersed
Bda09g00455 Bda-Chr9:5956307 Bda12g00994 Bda-Chr12:41256856 5.27E-84 dispersed
Bda09g00455 Bda-Chr9:5956307 Bda03g01396 Bda-Chr3:50685274 1.16E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g802 . . . Bda09g00455 . Bpe08g01071 . . . . Cma01g01037 . Car01g00912 . . . Cpe02g00854 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma07g01230 . . Cmo01g01076 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006191 2 1 2 3 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00455 Bda_Chr09 FPKM 28.417177 31.603472 32.210609 34.036793 26.783062 27.650911 26.537703 30.668016 29.554665