Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00465 ATGGAGGCCATTCGAAAGCAGGCTAGCAAGCTCAGAGAACAAGTTGCGAAGCAACAGCAGGCGTTATTGAAACAATTAGGTCATTTTGGACATGAAATAAATTTGGTGGATGAAGCTGAGCTTCAGTGTCACCAACAACTTCAAAGCCTCTACAACTCCACTCGGGCTGCTAAGCATTTCCAGAGAAATATTGTTCGCGGTAACGGAGGTTTCACAGCTATAAGCTCAAAACAAATGGAAATAGTGAGAAGATTAGCTGAGGATTGTTGCAGATATGCTAATGATGATCTAAATGCTAATTCTTCCCTTGCAAGAGTTGCTTTGAGCTTTGGTACATCGCATAGTTCAATGGAGAAGGAGAGGGAGACTTTACTTTTCACCCTAACTGAACAGGTCTCGGAGCCACTACGGTCACAAATAAAGGGGGCACCATTGGAAGATGCTCGACACTTGACTCATCGTTACGAAAAACTGAGGCAGGATGTAGAATCTCAGGTAGCTGAGGTATGGAGACGACAATCCAAGTTCAGAGATTCACCTATATCTTCTGAGAGCTCCATGAGGCTTCAAATGGCAGAGACAAGATTGAGTGAGCTTAAATCTATGATAGTGGCATTAGGGAAAGAAGCAATTGCTGCTATGGTTGCAGTTGAAGATGAACAACAACAAGTCACTTTCCACAGACTTCTTACCATGGTGAAAGCAGAGAGATCTTATCATGAAAATGCTCTTGATATTTTAGAAAGGTTGAATGATGAGATGATTCTAACAACGCAATCAATTGGATCTTCATCTGAATCATCAACTGTGCGCGAAAATACATGTAATGAACCTGTACATGGGGATATTAAGCTGAAGGAATCCGATGCCGATGACAACATAAACAACAATAGAACCTACGTTATGGCAAAAGTTATCCACTCCTTCGATGCTGAAGTAGATGGAGAATTAAGTCTATCCATGGATGATTTCGTTGTGCTTCTCCAGGTTGGGTCCAATGGATGGTCAGAAGGAGAGTGCAATGGCAAGGTTGGATGGTTTCCATCTGCCTATGTTCAACTGCAGGAGAGCACTGAAGTGAAGGTTTAA 1089 42.33 MEAIRKQASKLREQVAKQQQALLKQLGHFGHEINLVDEAELQCHQQLQSLYNSTRAAKHFQRNIVRGNGGFTAISSKQMEIVRRLAEDCCRYANDDLNANSSLARVALSFGTSHSSMEKERETLLFTLTEQVSEPLRSQIKGAPLEDARHLTHRYEKLRQDVESQVAEVWRRQSKFRDSPISSESSMRLQMAETRLSELKSMIVALGKEAIAAMVAVEDEQQQVTFHRLLTMVKAERSYHENALDILERLNDEMILTTQSIGSSSESSTVRENTCNEPVHGDIKLKESDADDNINNNRTYVMAKVIHSFDAEVDGELSLSMDDFVVLLQVGSNGWSEGECNGKVGWFPSAYVQLQESTEVKV 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6065706 6069267 - Bda031055.1 Bda09g00465 12715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00465 362 ProSiteProfiles Src homology 3 (SH3) domain profile. 298 357 IPR001452 GO:0005515
Bda09g00465 362 SUPERFAMILY BAR/IMD domain-like 42 254 IPR027267 -
Bda09g00465 362 Coils Coil 148 168 - -
Bda09g00465 362 Coils Coil 1 21 - -
Bda09g00465 362 SMART SH3_2 301 356 IPR001452 GO:0005515
Bda09g00465 362 Gene3D SH3 Domains 285 361 - -
Bda09g00465 362 SUPERFAMILY SH3-domain 301 358 IPR036028 GO:0005515
Bda09g00465 362 Coils Coil 189 209 - -
Bda09g00465 362 Pfam Variant SH3 domain 305 353 IPR001452 GO:0005515
Bda09g00465 362 Gene3D Arfaptin homology (AH) domain/BAR domain 2 256 IPR027267 -
Bda09g00465 362 PANTHER SH3 DOMAIN-CONTAINING PROTEIN 2-LIKE ISOFORM X1 1 356 - -
Bda09g00465 362 PANTHER SH3 DOMAIN-CONTAINING 1 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00465 - - - qsu:112027004 455.292
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00957 Bda-Chr8:18678618 Bda09g00465 Bda-Chr9:6065706 5.98E-95 dispersed
Bda09g00465 Bda-Chr9:6065706 Bda06g00963 Bda-Chr6:27076547 2.19E-106 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g923 . . . . . . Bma07g01221 . . . . . . . . . Cpe02g00590 . . . . . . . . . . . . . . . . Cone6ag0875 Cone9ag0881 . . . . . . . Bda09g00465 Bpe08g01063 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012200 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 0 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00465 Bda_Chr09 FPKM 5.004115 3.461311 1.51765 2.187477 2.548758 0.828233 1.478096 3.693765 3.254882