Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00467 ATGACGCAGCATGAAATGTCTCCCAGCGCAAGAACTCTCAGTGAAATTCTCTTCAGGACCTCTCCCAATGGCGTTGAATCGGCTCTCTCCGCCTCTGGTATACTCCCTTCTCCCGAGCTTGTCCAGGAAGTTCTGAAGTTATCCTATGGTCACCCATCCGCCGCTATCAAGTTCTTCCGTTGGGCGGGGGTGTCGCAGAAGCACACAGCCTACTCGTGGAACCTGATGGTGGATTTGCTGGGCAAGAATCAGATTTTCGATCCTATGTGGGCCGCCATTCGGTCCATGAAGCAGGAGGAGGTTCTTTCATTGCCCACTTTTGTTTCTGTTTTCGAGAGTTATTGTATTTCCGGCAGGTTTAAAGAGGCGGTTATGAGTTTTGATGTGATGGAAAACTATGGAATCCGGCAGGATGTTCTGGCTGTAAACTCATTATTGAGTGCAATATGCCGCGAGGACAATCAAACCACAGTGGCTTGGGAATTCTTTGAGAAAATCAAAGAAAAGATTCCTCCAGATGGAGATACCTTTGCCATTTTGTTGGAGGGCTGGGATAAGGAAAGCAATTTGCACAAATCCAAGTCTACATTGGATGCAATGGTGGCTTGTATCGGATGGAGCCCGAAAAACATGCCCACTTATGAAGCTTTTTTGATGACACTTGTTCGTGCATCCGAAGCTGAAGAGGCAGTTGAGCTTCTTCGAGCTATGAAACAAAATAACTGCTTGCCTGGTATGAAATTTTTCTCCGATGCTCTTGATTTTATCATTAAAGAGAACGATGTGGCACATGCGATTTCATTGTGGGATATTATGGTAGATGGTGGGTTGGCTCCCAACTTGATAATGTGTAATGCAATGATTGGATTGCTCTGTAACAACAATAGAATTGATGATGCTTTTGAGCTTTTCGATGGGATGATCTTTCATGGTGCTTTTCCTGATTCATTGAGTTATAACATGATTTTTAGTTGTTTGATCAAGAATCGAAAGGTTCACGATGCGGGTAAATTTTTCCTCGAGATGCTGAAAAATGAGTTCCCTCCAACTCATCCCAATTGTGCTGCAGCTATTGCAATGCTATTTGAAGGCGATGATCCTGAAGCAGCTTTTGATATTTGGTATTACATGGTTCAGAACCATGTCAAACCCATTGACGATAGTGCAAATGCATTGCTTGTTGGCCTTGGAAATTTAGGTCGATTATCAGAGTTGAAGAGATTTGCCGAGGACATGCTTGATCAAAGAATTAGAATAGACGAGTCTACAATGGAAATTTTGAGGACTGCTTTTTATAAGCAGGGAACCATTTTCAGAGATAAGTACGACAGTCTTAGGAGGAAGTGGAAAGCTCTCTAG 1359 43.34 MTQHEMSPSARTLSEILFRTSPNGVESALSASGILPSPELVQEVLKLSYGHPSAAIKFFRWAGVSQKHTAYSWNLMVDLLGKNQIFDPMWAAIRSMKQEEVLSLPTFVSVFESYCISGRFKEAVMSFDVMENYGIRQDVLAVNSLLSAICREDNQTTVAWEFFEKIKEKIPPDGDTFAILLEGWDKESNLHKSKSTLDAMVACIGWSPKNMPTYEAFLMTLVRASEAEEAVELLRAMKQNNCLPGMKFFSDALDFIIKENDVAHAISLWDIMVDGGLAPNLIMCNAMIGLLCNNNRIDDAFELFDGMIFHGAFPDSLSYNMIFSCLIKNRKVHDAGKFFLEMLKNEFPPTHPNCAAAIAMLFEGDDPEAAFDIWYYMVQNHVKPIDDSANALLVGLGNLGRLSELKRFAEDMLDQRIRIDESTMEILRTAFYKQGTIFRDKYDSLRRKWKAL 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6077795 6079153 + Bda031056.1 Bda09g00467 12717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00467 452 Pfam PPR repeat family 279 327 IPR002885 -
Bda09g00467 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Bda09g00467 452 PANTHER OSJNBA0019D11.15 PROTEIN 3 451 - -
Bda09g00467 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 137 IPR002885 -
Bda09g00467 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Bda09g00467 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Bda09g00467 452 Pfam PPR repeat 213 242 IPR002885 -
Bda09g00467 452 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 3 451 - -
Bda09g00467 452 Pfam Pentatricopeptide repeat domain 128 181 IPR002885 -
Bda09g00467 452 Gene3D Tetratricopeptide repeat domain 47 209 IPR011990 GO:0005515
Bda09g00467 452 Gene3D Tetratricopeptide repeat domain 221 450 IPR011990 GO:0005515
Bda09g00467 452 TIGRFAM PPR: pentatricopeptide repeat domain 283 315 IPR002885 -
Bda09g00467 452 TIGRFAM PPR: pentatricopeptide repeat domain 318 350 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00467 - - - rcu:8280129 606.675
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00467 Bda-Chr9:6077795 Bda11g00588 Bda-Chr11:6017382 1.73E-40 dispersed
Bda09g00467 Bda-Chr9:6077795 Bda11g01677 Bda-Chr11:50916385 1.99E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g948 . . . . . . Bma07g01219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda09g00467 . . . . . . . . . . . . Cpe06g00595 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011572 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00467 Bda_Chr09 FPKM 4.336158 4.564527 6.632959 6.645897 7.318346 5.368593 6.184736 6.42089 6.122019