Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00485 ATGTGGGGTTTATCCTGCTCCTTTCCTTCTTACTCTACGTCTTCAGTTGTAAGTTTCAGACCCGTTGCTTCTCTTCGGACGGACTTTCGAGTTTCACACGCCATTAATGGCGGCAATCATTTCAGTGAGACCCCTTTTGTTCCGGAGGTTGTAAAAGCAGTTGAATCGTTGCAGGCAGAATTCCGAGCAGTGGATAATTTGGTAGCATGTAATACAGCTCGAATTCTTCGAGCATTTCAGAATGCTCGAGTGGGATCTCATCACTTTGGTGGATCGACTGGCTATGGCCACGATGAGGCAGGGGGCCGTGAAGCATTAGACAACGCCTTTGCAGAGATTGTTGGAGCTAAATCTGCAATAGTTCGGTCACAGTTTTTCTCAGGCACTCATGCCATCACTTGTGCCTTATTTGCCTTTTTACGGCCCGGGGATGAGCTCTTGGCCGTGGCCGGTGCTCCATATGACACCTTAGAAGAAGTGATCGGGAAAAGAGATTCGAACGGGCTTGGCTCGTTGAAAGATTTTGGAGTTCAATATCGAGAAGTTCCACTTTCAGATGACGGTGGACTTAACTGGGAAGCACTTAAAAATGCTGTGAAGTCGGAGACTAAATGTGCTCTCATACAGAGGTCTTGTGGATATTCATGGCGGAGAAGTTTAAGCGTAGATGAAATAGGAAGGGCGATAAAGCTTATCAAGATTCAGAATCCAGACTGTAAGGTGATGGTGGATAATTGCTATGGTGAATTTGTGGAAACGATTGAGCCTCCAATGGTGGGTGCAGATCTAATTGCTGGCAGTTTGATCAAAAACCCTGGTGGAACAATCGCTCCGTGCGGTGGATATGTAGCCGGAGGAGACAGATGGGTTCAGGCGGCTGCAGCCCGCTTATCTGCCCCTGGTTTAGGTGTTGATTGTGGCTCAACTCCGGGTGACGTAATGCGTTCGATATTCCAAGGGTTATTTCTTTCTCCTCAAATGGTTGGAGAGGCACTAAAGGGAACTTTTCTAGTCGCAGAGGTAATGGCATCACGAGGGTATAAAGTGCAGCCACTCCCCCGTATTACCCGTCATGATACAGTACAGGTGAGCAGTAGAGCTCAAAGCAGACAGAACTTACTGGCTTTCTGTGAAGCCGTCCAAAGAAGCTCACCCGTGGGTTCATTCACTAAACCAGTTGCCGGAAATACTCCCGGATATGCCTCTGAGGTGATTTTTGCCGATGGAACCTTCATCGATGGAAGTACAAGCGAACTCTCCTGCGATGGACCCCTTAGAGAGCCATTTGCCGTCTTTTGTCAGGGTGGAACTCACTGGACTCAGTGGGGGCTGGTTCTGGGAGAGGTCTTGAAATCCTTGTAG 1362 48.31 MWGLSCSFPSYSTSSVVSFRPVASLRTDFRVSHAINGGNHFSETPFVPEVVKAVESLQAEFRAVDNLVACNTARILRAFQNARVGSHHFGGSTGYGHDEAGGREALDNAFAEIVGAKSAIVRSQFFSGTHAITCALFAFLRPGDELLAVAGAPYDTLEEVIGKRDSNGLGSLKDFGVQYREVPLSDDGGLNWEALKNAVKSETKCALIQRSCGYSWRRSLSVDEIGRAIKLIKIQNPDCKVMVDNCYGEFVETIEPPMVGADLIAGSLIKNPGGTIAPCGGYVAGGDRWVQAAAARLSAPGLGVDCGSTPGDVMRSIFQGLFLSPQMVGEALKGTFLVAEVMASRGYKVQPLPRITRHDTVQVSSRAQSRQNLLAFCEAVQRSSPVGSFTKPVAGNTPGYASEVIFADGTFIDGSTSELSCDGPLREPFAVFCQGGTHWTQWGLVLGEVLKSL 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6342142 6346010 - Bda031081.1 Bda09g00485 12735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00485 453 Pfam Methionine gamma-lyase 52 451 IPR009651 -
Bda09g00485 453 Gene3D - 59 443 - -
Bda09g00485 453 Gene3D - 93 308 IPR015421 GO:0003824
Bda09g00485 453 PANTHER - 4 453 IPR009651 -
Bda09g00485 453 SUPERFAMILY PLP-dependent transferases 73 449 IPR015424 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00485 - - - qsu:112032095 748.043
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g283 . Blo03g01527 . Bda09g00485 . Bpe08g01043 . . . . . . . . Sed04g3149 . . Bhi09g01999 Tan01g4449 Cmetu04g1129 . . . . . . . . . . . . Cone9ag0140 . . . . . . . . . . . . Bma07g01199 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006193 1 2 2 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 5 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00485 Bda_Chr09 FPKM 11.770833 13.496624 13.7637 14.830629 12.271118 11.551106 16.720184 24.77578 23.510971