Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00500 ATGGCAAAGATGAAAGAGCGGAAGGTGAACATATCCGGAAAGCCGAAGCATTCGCTTGACGTTAACCGAAAAGATGGGGACAAGGATTCTCGCAGCGCCGCTACGGTACGTCGGCTTAAGATGTATAATACGAGGCCGAAGCGCGATCGTAAAGGAAAGATTTTGAGAAATGAGTACCAATCGAAAGAGTTGCCCTGCACTCGGATCCAACCTGATCGCCGCTGGTTCGGGAACACTCGAGTTGTAAACCAGAAGGAGCTTGAAATTTTCCGAGACGAGCTTCAGAATCGGATGTCCAGCCAATATAATGTCATTTTGAAGGAGAAAAAGTTGCCTTTGTCCCTCTTGAATGACCATCAGAAGCAATCCAGAGTTCATCTTCTGGATACTGAGCCATTTGAGGATGCATTTGGACCAAAGAGGAAGAGGAAGCGTCCAAAGCTCTTGGCTGCTGATTATGAGGCATTACTTAAAAAAGCAGACGGTTGCCAAGATGCCTTTGAGGAGAAGCATGCTGCTAATGAAACTGTTGAAGAAAATGAAGCTGATGGCTTTAAGGACCTTGTTCGACATACAATGTTTGAAAAGGGTCAAAGTAAGCGGATATGGGGTGAGCTCTACAAAGTTATAGACTCATCTGATGTTGTTATCCAGGTTTTGGATGCTAGAGATCCACAAGGAACTAGATGTTACCATTTAGAGAAGCATCTGAAAGAGCATTGCAAGCACAAACACATGGTTCTTTTGTTGAATAAGTGTGATTTAATTCCAGCATGGGCAACAAAAGGCTGGCTCAGGGTATTGTCCAAAGAATATCCTGCTCTAGCATTTCATGCAAGCGTCAACAAGTCTTTTGGAAAGGGCTCTCTTCTATCGGTGCTTAGACAATTTGCTCGCCTCAAAAGTGATAAGCAAGCAATTTCAGTGGGATTTATTGGGTATCCCAATGTTGGAAAGTCATCTGTTATTAACACACTGAGGACGAAAAATGTTTGCAAGGTTGCTCCCATACCTGGAGAAACGAAAGTGTGGCAGTATATAACTCTTACAAATAGGATATTTTTAATTGATTGCCCTGGAGTTGTTTACCAGAACAAAGACACAGAAACAGATATCGTGCTAAAGGGCGTGGTACGTGTCACAAATTTGGAGGATGCTTCGGAACACATCGGAGAAGTCTTGAAACGAGTGAAGAAAGAGCACCTTGAAAGAGCCTACAGAATTAAAGAATGGAAGGACGACAATGATTTCTTAGTTCAGCTCTGCAAATTCACAGGCAAATTGCTGAAGGGCGGCGAACCTGACTTGACCACCGCTGCAAAAATGGTCCTTCACGACTGGCAAAGGGGTAGGATACCATTTTTCGTCCCACCTCCTCGAGTTGAAGACTCGGCAGAGGAGCCAAATAATTATGGTTTAGACATAGACTCGGCAGAAAATAACGAGAAGGCTTCTTTAGCTTTGAAAGCCATTGCCAGTGTGATCTCATCTCAGCAGCAAAAAAGTGTCCCCGTCCAAAGAGATCTATTCACTGAAAATGAGTTAAAGGGCGAGTCATTTGACCCTAATCCAGCCACTGTCAATGAAACCGATGAGCAGCTTCCGGTAACTAATATAGAGTCGCCGGAGCAGTCATCGGACAGCGAGGATGAAGCGTCTGAGAGTGAGTGA 1671 44.28 MAKMKERKVNISGKPKHSLDVNRKDGDKDSRSAATVRRLKMYNTRPKRDRKGKILRNEYQSKELPCTRIQPDRRWFGNTRVVNQKELEIFRDELQNRMSSQYNVILKEKKLPLSLLNDHQKQSRVHLLDTEPFEDAFGPKRKRKRPKLLAADYEALLKKADGCQDAFEEKHAANETVEENEADGFKDLVRHTMFEKGQSKRIWGELYKVIDSSDVVIQVLDARDPQGTRCYHLEKHLKEHCKHKHMVLLLNKCDLIPAWATKGWLRVLSKEYPALAFHASVNKSFGKGSLLSVLRQFARLKSDKQAISVGFIGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTNRIFLIDCPGVVYQNKDTETDIVLKGVVRVTNLEDASEHIGEVLKRVKKEHLERAYRIKEWKDDNDFLVQLCKFTGKLLKGGEPDLTTAAKMVLHDWQRGRIPFFVPPPRVEDSAEEPNNYGLDIDSAENNEKASLALKAIASVISSQQQKSVPVQRDLFTENELKGESFDPNPATVNETDEQLPVTNIESPEQSSDSEDEASESE 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6633177 6637417 + Bda031098.1 Bda09g00500 12750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00500 556 MobiDBLite consensus disorder prediction 512 556 - -
Bda09g00500 556 MobiDBLite consensus disorder prediction 1 35 - -
Bda09g00500 556 Gene3D - 364 456 IPR023179 -
Bda09g00500 556 PANTHER GTP-BINDING PROTEIN-RELATED 7 550 - -
Bda09g00500 556 Pfam 50S ribosome-binding GTPase 309 374 IPR006073 GO:0005525
Bda09g00500 556 CDD NGP_1 205 361 - -
Bda09g00500 556 MobiDBLite consensus disorder prediction 523 543 - -
Bda09g00500 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 436 IPR027417 -
Bda09g00500 556 PANTHER NUCLEOLAR GTP-BINDING PROTEIN 2 7 550 IPR024929 GO:0005730
Bda09g00500 556 Pfam NGP1NT (NUC091) domain 41 164 IPR012971 -
Bda09g00500 556 PRINTS GTP1/OBG GTP-binding protein family signature 309 329 IPR006073 GO:0005525
Bda09g00500 556 PRINTS GTP1/OBG GTP-binding protein family signature 355 370 IPR006073 GO:0005525
Bda09g00500 556 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 203 364 IPR030378 GO:0005525
Bda09g00500 556 Gene3D - 193 363 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00500 K14537 NUG2, GNL2; nuclear GTP-binding protein - jre:108992948 901.353
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01106 Bda-Chr6:39235471 Bda09g00500 Bda-Chr9:6633177 2.28E-32 dispersed
Bda09g00500 Bda-Chr9:6633177 Bda12g00490 Bda-Chr12:6603137 4.34E-62 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g247 . Blo03g01541 . Bda09g00500 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0136 Cone9ag0161 . . . . . . . . . . . . Bma07g01183 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006194 1 2 1 2 0 1 1 1 1 2 1 1 1 0 1 1 1 2 1 1 1 1 1 1 1 2 1 5 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00500 Bda_Chr09 FPKM 0.0 0.350728 3.968567 2.187854 3.535362 3.947969 2.576688 0.769836 1.68597