Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00507 ATGTCTAGGAGAATAATAATGGAGGGATCGTCTAATTCGAACTGGAGGAAGTCTGAAAGTAATAGAGGTTATGATTCTCGTCCAAGCACATTCGAGTTACCTCGTGATTCTGGGTCTGTAAGAGAGAGAGAGAGGGCTGTAATGGCTCCTCATGTTGATTTTCTTAGGCTAAACCATGATGGATTTTCCGAGGTTTGTGAAGATGGCGACCCATCAAATGATCCTTGTACCCTTTCAACTGCAAAGGGCGATATTAGCTTGAGAAATTGGCTGGACAAACCTGAGAGATCAGTCAATGCTTTTGAATGTCTTCATATATTTCGGAAAATAGTCGAGATTGTTAATAAGGCACATTCTCAAGGGGTTGTGTTTCTCAATCCTCGTCCTTCATGTTTTCTGATGCCCTCTTTGGATCGCATTTCCTTCATCGGTTCAATGTCTGGGTCGGATTCTTTGGAGGATGGATTAACAGACCAAACTATGGAGGTTGAAAATATCTCATCTATGATGCCAAAGAGTCTAGCAAGTGAAGACTTTCGACCTCAGATATTTTCAACAAAGGATTTATCAGAAACTTCTTCCGTGCAGTCAAGCTCCTTTCATTTAGCCCGAGTATCGTTAACAGAAGAGGCTGGAAAACAAAAAGATAAAGATGGAAAATATGTTGAATTCGCAGAAGAAAAGAAGGTGGCCTCTCCAATGAAGCAAATTTTAAGCATGGAGAGTAGTTGGTACACTAGCCCTGAAGAGGCTTCTGGCTCTCCAAGTGCATGTTCTTCGGATATCTACCGATTAGGAGTTCTTCTCTTTGAGTTATTCTGCCCCTTCGCCTCGAGGGAGGAAAAAAATAGAACCATGTCTAGTCTGAGACATCGAGTTCTTCCACCTCAATTACTGTCAAAGTGGCCCAAAGAAGCTTCATTTGGCTTATGGCTGCTGCACCCTGAACCAAACTGTCGACCAAAATTAAGTGAGTTGTTACAGAGCGAATTCCTTAATAAACGGAGAGATGACTTTGAAGAGCGTGAAGCAGTACTAAATCTCGGAGAAAGAATAGAGCAGCAGGAGTTGTTGCTAGAATTTCTTTTGCTCATACAGCAAAGGAAGCAAGAAGCTACCCATAAGTTGCAGGATACCATTTCTCTCCTTTACTCCGACATCGAGGACGTATTGAAGCAACTAAAGATTATTCACGAGAAGAACAGTGATTCCTCTACAGAGCTTGATGGTGAAAGTAAGGATATATTTGATTCAGAGGCCAGGAAAAGATTCAAATCAAGTGTTCAAATGAGAGATGATGAAGTGTGCGATGAAAATTTTGATGGTAAAGACAAGTCGGAAATAATCGATGAAACTGCAGGAACAATTCATTCGAAAAGCTATCGTTTGAGGAATAATTTTAAGAAAATAGAGTCGGTATACTTTTTAATGCGAAGCAGACAGATCAACCAAATGAGAAAACAGTTGATTGGACCTTCACCGATGAGATGCGATGGAAGGGGGTCATCCGTGGTCATGAATGAAAGAAGCTCGGCAAGCGTTTCAGCCTCGAAGGTGTTGCCTTGCGGTCGACAAGGCGGGTGGATTAATGGGTTCCTCGATGGTTTATGCAAATATCTAACTTTTAGTAAGCTAAGCGTTAAGGCGGATTTAAAGCAAGGAGATTTATTAAATTATTCTAATCTAGTGTCCACTCTTACATTTGATCGAGATGGGGATTTTTTCGCCACGGCTGGTGTAAATAAGAAAATAAAAGTATTTGAATATGAAGGGATTGTGAATAAAGATAATGATATTCATTATCCTATTGTTGAAATGGTAAGTAGATCAAAGCTGAGCAGTATTTGTTGGAACAGCTATATCAAGTGTCAAATTGCTTCAAGCAATTTTGAAGGTATTGTGCAGGTATGGGATGTTACAAGAAGTCAAGTACTAATCGAAATGCGAGAACATGACAAGCGTGTCTGGTCCGTCGATTTCTCATCAGCAGATCCGACCATTTTAGCCAGTGGCGGGGATGACGGTTATGTGAAGTTATGGAACATTAATCAGGCAATGAGTATTGGTACCATTAAAGCGAAGGCCAATGTCTGTTGTGTTCAATTTCCGGCAGATTCAAGTCGTACGCTTGCATTTGGCTCTGCAGACCATAAATTATACTACTACGATCTACGGAATGCAAAATTTCCCCTCTGCACATTTGTCGGGCACAATAAGACTGTGAGTTATGTCAAATTCATCGACTCATCGACTCTTGTTTCTTCTTCGACTGACAATACTTTAAGGCTATGGGATTTGTCCATGTGTCCATCTCCAATTGTCGACACTCCCGTCCAATTATACACCGGTCATATGAACATTAAGAACTTTGTTGGATTATCTGTCTCCAATGGTTTTATTGCTACTGGTTCAGAGACAAATGAGATTTACGTCTACCACAAATCATTTCCAATGCCGGCCTTGTCGTACAAGTTTCAGACGAACCAACTTTCGAACCATGATTTTGACGATGCTGTGCAGTTTGTCTCGTCTGTTTGTTGGCGCGGGAACTCGTCGACGCTAATTGCTGCAAATTCTACTGGTCATATCAAAGTCTTGGAGATGGTCTAA 2610 41.07 MSRRIIMEGSSNSNWRKSESNRGYDSRPSTFELPRDSGSVRERERAVMAPHVDFLRLNHDGFSEVCEDGDPSNDPCTLSTAKGDISLRNWLDKPERSVNAFECLHIFRKIVEIVNKAHSQGVVFLNPRPSCFLMPSLDRISFIGSMSGSDSLEDGLTDQTMEVENISSMMPKSLASEDFRPQIFSTKDLSETSSVQSSSFHLARVSLTEEAGKQKDKDGKYVEFAEEKKVASPMKQILSMESSWYTSPEEASGSPSACSSDIYRLGVLLFELFCPFASREEKNRTMSSLRHRVLPPQLLSKWPKEASFGLWLLHPEPNCRPKLSELLQSEFLNKRRDDFEEREAVLNLGERIEQQELLLEFLLLIQQRKQEATHKLQDTISLLYSDIEDVLKQLKIIHEKNSDSSTELDGESKDIFDSEARKRFKSSVQMRDDEVCDENFDGKDKSEIIDETAGTIHSKSYRLRNNFKKIESVYFLMRSRQINQMRKQLIGPSPMRCDGRGSSVVMNERSSASVSASKVLPCGRQGGWINGFLDGLCKYLTFSKLSVKADLKQGDLLNYSNLVSTLTFDRDGDFFATAGVNKKIKVFEYEGIVNKDNDIHYPIVEMVSRSKLSSICWNSYIKCQIASSNFEGIVQVWDVTRSQVLIEMREHDKRVWSVDFSSADPTILASGGDDGYVKLWNINQAMSIGTIKAKANVCCVQFPADSSRTLAFGSADHKLYYYDLRNAKFPLCTFVGHNKTVSYVKFIDSSTLVSSSTDNTLRLWDLSMCPSPIVDTPVQLYTGHMNIKNFVGLSVSNGFIATGSETNEIYVYHKSFPMPALSYKFQTNQLSNHDFDDAVQFVSSVCWRGNSSTLIAANSTGHIKVLEMV 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6716292 6722666 + Bda031106.1 Bda09g00507 12757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00507 869 MobiDBLite consensus disorder prediction 1 40 - -
Bda09g00507 869 SMART WD40_4 684 723 IPR001680 GO:0005515
Bda09g00507 869 SMART WD40_4 727 765 IPR001680 GO:0005515
Bda09g00507 869 SMART WD40_4 774 813 IPR001680 GO:0005515
Bda09g00507 869 SMART WD40_4 599 638 IPR001680 GO:0005515
Bda09g00507 869 SMART WD40_4 641 681 IPR001680 GO:0005515
Bda09g00507 869 SMART WD40_4 828 867 IPR001680 GO:0005515
Bda09g00507 869 SMART WD40_4 550 588 IPR001680 GO:0005515
Bda09g00507 869 ProSitePatterns Trp-Asp (WD) repeats signature. 668 682 IPR019775 -
Bda09g00507 869 ProSiteProfiles Trp-Asp (WD) repeats profile. 648 690 IPR001680 GO:0005515
Bda09g00507 869 ProSiteProfiles Protein kinase domain profile. 1 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda09g00507 869 Pfam WD domain, G-beta repeat 645 681 IPR001680 GO:0005515
Bda09g00507 869 Pfam WD domain, G-beta repeat 730 765 IPR001680 GO:0005515
Bda09g00507 869 PRINTS G protein beta WD-40 repeat signature 752 766 IPR020472 -
Bda09g00507 869 PRINTS G protein beta WD-40 repeat signature 625 639 IPR020472 -
Bda09g00507 869 PRINTS G protein beta WD-40 repeat signature 668 682 IPR020472 -
Bda09g00507 869 CDD WD40 556 865 - -
Bda09g00507 869 SUPERFAMILY WD40 repeat-like 557 866 IPR036322 GO:0005515
Bda09g00507 869 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 648 683 - -
Bda09g00507 869 Gene3D - 534 869 IPR015943 GO:0005515
Bda09g00507 869 ProSitePatterns Trp-Asp (WD) repeats signature. 752 766 IPR019775 -
Bda09g00507 869 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 734 767 - -
Bda09g00507 869 Gene3D Transferase(Phosphotransferase) domain 1 84 342 - -
Bda09g00507 869 PANTHER PROTEIN SPA1-RELATED 2 7 869 IPR044630 GO:0009640
Bda09g00507 869 MobiDBLite consensus disorder prediction 1 27 - -
Bda09g00507 869 PANTHER PROTEIN SPA1-RELATED 3 7 869 - -
Bda09g00507 869 SMART serkin_6 31 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda09g00507 869 SUPERFAMILY Protein kinase-like (PK-like) 64 341 IPR011009 -
Bda09g00507 869 ProSiteProfiles Trp-Asp (WD) repeats profile. 734 767 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00507 - - - qsu:111982906 1073.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00507 Bda-Chr9:6716292 Bda15g00733 Bda-Chr15:10813574 1.23E-47 dispersed
Bda07g00466 Bda-Chr7:5936957 Bda09g00507 Bda-Chr9:6716292 4.42E-147 transposed
Bda07g00842 Bda-Chr7:9865254 Bda09g00507 Bda-Chr9:6716292 3.74E-109 transposed
Bda12g00841 Bda-Chr12:38051704 Bda09g00507 Bda-Chr9:6716292 0 wgd
Bda07g00298 Bda-Chr7:4081493 Bda09g00507 Bda-Chr9:6716292 1.41E-139 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g218 . . . Bda09g00507 . . . Bma13g00954 . . . Cma09g00865 . . . Cpe06g00688 Cpe02g00702 Bhi09g03428 Tan01g4394 . . . Mch11g1069 . Cla11g01762 Cam11g1829 Cec11g1849 Cco11g1856 Clacu11g1989 Cmu11g1798 Cre11g2206 . . . . . Csa04g02344 Chy07g00076 . . . . . Bpe11g00483 . . Bma14g00239 . . Cmo09g00854 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00507 Bda_Chr09 FPKM 2.83438 2.275819 0.401487 0.581934 1.345327 1.518277 0.902216 0.920497 0.0