Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00513 ATGGGAACCAATCAACGAAAAACCACGTTACCGAGATTAGGGGCCGGGAAAAACGGCGGCGCCGGCGAAATCGTGGAGGTTCAGGGTGGTCATATCGTTCGCTCCACCGGCCGTAAAGATCGGCACAGCAAGGTCTGCACCGCGAAAGGGCCGAGAGACCGCCGTGTGCGACTCTCTGCCCACACCGCTATTCAGTTTTACGATGTTCAAGACCGACTAGGCTACGACCGACCGAGTAAAGCCGTCGATTGGCTCATAAAAAAGGCGAAATCCGCCATTGATGAACTTGCGGAGCTACCTGCATGGGACCCACATACAGCAACGAACCTGAATACTCGGACCAGAGCCATGCAGAACCATTTAAACGAAAACAGTGAAAACTCGATCGGAATCATTGATAATAGGAGAGTCACGATGGTGGAAAACGAATTGTTTTTGCAGAATTTGCAGCGTTCAGAAATGGAAGAAAACCAGAACTACAAAGGTAATTCGAGCTTTCTGCCGCCATCGCTTCACTCGGACTCCATTTCTGATACAATTAAATCGTTTTTTCCGATGGGAACTTCGGCAATGGCGGGAACTCCATCTTCTACTGTTCCATTTCAGAGTTACCCGGCTGATTTTTCAAGCAGAAATGGCCGCCATAGCGAAGATCTACAGCTCTCTTTGCAGTCACTTCATGGCAATGAAAACGAGCATGTTATGTTCTCTGCAACTGCTCCGCCGATCGATGGATTCGACGGGTGGTCGGAGCAGCAGAACCACCACCCAGCGCCGGAGATTAGCCGGTTTCAGAGAATGTTTCATTGGAATTCTGCCCTGACAGATACTGGTAATGGAAATGGGAGTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGCAAATAATCCATGAACTTAGAGGTATTAGTGACTAA 2550 17.18 MGTNQRKTTLPRLGAGKNGGAGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDELAELPAWDPHTATNLNTRTRAMQNHLNENSENSIGIIDNRRVTMVENELFLQNLQRSEMEENQNYKGNSSFLPPSLHSDSISDTIKSFFPMGTSAMAGTPSSTVPFQSYPADFSSRNGRHSEDLQLSLQSLHGNENEHVMFSATAPPIDGFDGWSEQQNHHPAPEISRFQRMFHWNSALTDTGNGNGSGFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFRQIIHELRGISD 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6784640 6787189 - Bda031113.1 Bda09g00513 12763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00513 849 Pfam TCP family transcription factor 37 153 IPR017887 -
Bda09g00513 849 MobiDBLite consensus disorder prediction 1 22 - -
Bda09g00513 849 ProSiteProfiles TCP domain profile. 38 96 IPR017887 -
Bda09g00513 849 PANTHER TRANSCRIPTION FACTOR TCP4 3 287 - -
Bda09g00513 849 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 287 IPR005333 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00513 - - - csv:101206841 320.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00513 Bda-Chr9:6784640 Bda12g00823 Bda-Chr12:37667784 8.25E-81 dispersed
Bda05g00782 Bda-Chr5:56270565 Bda09g00513 Bda-Chr9:6784640 1.30E-82 wgd
Bda07g00262 Bda-Chr7:3511873 Bda09g00513 Bda-Chr9:6784640 1.59E-145 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00079 . 35 261 TCP Transcription Factor Family AT5G23280 53.2 1.3e-52 203.4
Bda14g00462 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.3e-52 203.4
Bda14g00488 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.3e-52 203.4
Bda15g00075 . 35 260 TCP Transcription Factor Family AT5G23280 53.0 2.3e-52 202.6
Bda14g00846 CCT,ECH 68 170 TCP Transcription Factor Family AT3G47620 80.8 3.0e-40 163.3
Bda12g00454 . 1 287 TCP Transcription Factor Family AT3G27010 53.4 1.2e-66 250.4
Bda07g01383 . 7 243 TCP Transcription Factor Family AT3G27010 57.9 4.5e-58 221.9
Bda14g00462 . 1 259 TCP Transcription Factor Family AT5G08330 51.9 2.8e-60 228.8
Bda14g00488 . 1 259 TCP Transcription Factor Family AT5G08330 51.9 2.8e-60 228.8
Bda15g00079 . 35 259 TCP Transcription Factor Family AT5G08330 54.1 5.1e-54 208.0
Bda15g00075 . 35 258 TCP Transcription Factor Family AT5G08330 53.3 7.4e-53 204.1
Bda12g00823 BCT 18 223 TCP Transcription Factor Family AT1G53230 52.1 2.4e-45 179.9
Bda09g00513 . 18 272 TCP Transcription Factor Family AT3G15030 50.4 1.3e-55 214.2
Bda14g00885 BCT 31 173 TCP Transcription Factor Family AT5G60970 57.6 3.7e-40 162.5
Bda14g01404 . 23 209 TCP Transcription Factor Family AT2G31070 54.0 4.7e-43 172.2
Bda15g00870 . 8 192 TCP Transcription Factor Family AT2G31070 53.5 2.2e-40 163.3
Bda15g00925 . 25 208 TCP Transcription Factor Family AT2G31070 53.3 2.9e-40 162.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001202 4 3 4 3 3 1 4 2 1 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 2 2 2 3 3 1 75
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16380 PF03634 TCP 1.50E-32 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00513 Bda_Chr09 FPKM 0.0 0.0 0.0 0.0 0.147715 0.208873 0.159194 0.0 0.0
Bda09g00513 Bda_Chr09 FPKM 0.0 0.0 0.0 0.0 0.078888 0.08107 0.055926 0.0 0.0