Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00514 ATGGAGTTTCAGAGGTCTCTCTCTCTCTTCTTCCTGGTTGTCTTTTCAATTTTTCTTTCTTCCTGTGAAGCTTACAAATTCTATGTTGGTGGGAATAATGGGTGGATCGTCAATCCTTCTGAGAACTATAATCTTTGGGCTGAAAGAAACAGGTTCCAAATCAACGACACTCTCTTTTTTAAGTATGAACGAGGATCGGATTCTGTTCTGGTGGTGAATAAGAAGGATTATGAGAATTGCTATACGAAGAATCCGATCATGAAACTTGATAATGGAGATTCTGAGTTTAAGTTAGACAGGTCTGGGCCGTTTTACTTCATAAGTGGAAAAGATGGAAACTGTGAAAAAGGTCAGAAATTGATCGTCGTTGTTTTAGCTTTGAGGAGTCCTCCTCCGCCGCCTTCTCCAGCTACACCGGCATCGTCTCCATTTCCTGCAGCTCCAGAGCCTTCAATGGCGGCTCCACCCAGTACTCCTCCGAGCTCGCCATTTCCAGGTCCTCAAGCACCGTCTTCTGGTCACCCTTGTCCTCCATCTCCAACGTCTTCATCTCAATCGCCATCGTCAACGACTGCTCCGAGTTCGTCACCATCGGAGTCTACACTATCTCCGCCACCATCTGGGTCGTCGACGTTGACTGTAATTCCCTCTGCAACATTGGTGTTAACCGCTGTGACAGTCATGGTTTGGACGTCCTCTAATGCTCTATAG 711 46.27 MEFQRSLSLFFLVVFSIFLSSCEAYKFYVGGNNGWIVNPSENYNLWAERNRFQINDTLFFKYERGSDSVLVVNKKDYENCYTKNPIMKLDNGDSEFKLDRSGPFYFISGKDGNCEKGQKLIVVVLALRSPPPPPSPATPASSPFPAAPEPSMAAPPSTPPSSPFPGPQAPSSGHPCPPSPTSSSQSPSSTTAPSSSPSESTLSPPPSGSSTLTVIPSATLVLTAVTVMVWTSSNAL 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6802308 6803099 - Bda031114.1 Bda09g00514 12764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00514 236 Gene3D - 23 128 IPR008972 -
Bda09g00514 236 MobiDBLite consensus disorder prediction 131 182 - -
Bda09g00514 236 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Bda09g00514 236 CDD OsENODL1_like 25 125 IPR041846 -
Bda09g00514 236 Pfam Plastocyanin-like domain 35 118 IPR003245 GO:0009055
Bda09g00514 236 MobiDBLite consensus disorder prediction 183 211 - -
Bda09g00514 236 PANTHER BLUE COPPER PROTEIN 1 147 IPR039391 GO:0009055
Bda09g00514 236 PANTHER EARLY NODULIN-LIKE PROTEIN 2 1 147 - -
Bda09g00514 236 SUPERFAMILY Cupredoxins 24 125 IPR008972 -
Bda09g00514 236 ProSiteProfiles Phytocyanin domain profile. 25 126 IPR003245 GO:0009055
Bda09g00514 236 MobiDBLite consensus disorder prediction 131 211 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00514 - - - mnt:21392925 191.815
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01224 Bda-Chr1:47609870 Bda09g00514 Bda-Chr9:6802308 7.04E-18 dispersed
Bda09g00514 Bda-Chr9:6802308 Bda09g00860 Bda-Chr9:21054413 4.59E-38 dispersed
Bda01g01015 Bda-Chr1:43707226 Bda09g00514 Bda-Chr9:6802308 4.23E-33 transposed
Bda06g00300 Bda-Chr6:4977900 Bda09g00514 Bda-Chr9:6802308 1.02E-47 transposed
Bda07g00343 Bda-Chr7:4485962 Bda09g00514 Bda-Chr9:6802308 5.13E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g199 . . . Bda09g00514 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0153 Cone9ag0178 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda09g00514 . 8 146 Phytocyanin Superfamily AT5G53870 55.4 4.9e-40 162.2
Bda09g00860 . 1 142 Phytocyanin Superfamily AT1G48940 60.0 5.5e-45 177.6
Bda14g00907 . 492 618 Phytocyanin Superfamily AT1G48940 63.3 1.0e-43 173.3
Bda12g00590 CCT 1 142 Phytocyanin Superfamily AT1G48940 58.6 1.4e-43 172.9
Bda09g00514 . 5 140 Phytocyanin Superfamily AT4G27520 53.6 1.7e-37 153.7
Bda01g01015 . 12 172 Phytocyanin Superfamily AT2G25060 52.5 4.5e-42 167.9
Bda01g01224 . 41 191 Phytocyanin Superfamily AT5G15350 54.6 1.3e-46 183.0
Bda13g01701 . 32 181 Phytocyanin Superfamily AT5G15350 53.0 1.3e-43 172.9
Bda01g01015 . 10 176 Phytocyanin Superfamily AT4G31840 51.5 8.8e-43 170.2
Bda09g00860 . 21 131 Phytocyanin Superfamily AT3G18590 64.9 1.5e-40 162.9
Bda14g00907 . 512 621 Phytocyanin Superfamily AT3G18590 66.4 1.9e-40 162.5
Bda12g00590 CCT 21 131 Phytocyanin Superfamily AT3G18590 63.1 3.7e-39 158.3
Bda09g00514 . 8 146 Phytocyanin Superfamily AT5G53870 55.4 4.9e-40 162.2
Bda09g00514 . 5 140 Phytocyanin Superfamily AT4G27520 53.6 1.7e-37 153.7
Bda09g00860 . 21 131 Phytocyanin Superfamily AT3G18590 64.9 1.5e-40 162.9
Bda14g00907 . 512 621 Phytocyanin Superfamily AT3G18590 66.4 1.9e-40 162.5
Bda12g00590 CCT 21 131 Phytocyanin Superfamily AT3G18590 63.1 3.7e-39 158.3
Bda09g00860 . 1 142 Phytocyanin Superfamily AT1G48940 60.0 5.5e-45 177.6
Bda14g00907 . 492 618 Phytocyanin Superfamily AT1G48940 63.3 1.0e-43 173.3
Bda12g00590 CCT 1 142 Phytocyanin Superfamily AT1G48940 58.6 1.4e-43 172.9
Bda01g01015 . 24 177 Phytocyanin Superfamily AT5G25090 53.4 4.7e-39 157.9
Bda01g01015 . 12 172 Phytocyanin Superfamily AT2G25060 52.5 4.5e-42 167.9
Bda01g01015 . 10 176 Phytocyanin Superfamily AT4G31840 51.5 8.8e-43 170.2
Bda01g01224 . 41 191 Phytocyanin Superfamily AT5G15350 54.6 1.3e-46 183.0
Bda13g01701 . 32 181 Phytocyanin Superfamily AT5G15350 53.0 1.3e-43 172.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002701 2 2 1 2 4 1 2 2 1 2 2 2 2 2 2 2 1 1 2 2 2 2 1 2 2 2 2 1 2 1 54