Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00516 ATGACGGGCAAAGAAATCCTGAATAAAATGAAGGAAAAAGTCGGGTTGAGTTCATCGGATCCTGACTCTGGTAAAGGGAAGAGCAAGATGGTGAAGAACATAACTCATGGATTTCACTTGGTCAAGGGAAAGTCTCATCATGCAATGGAAGATTATGTCTTTGCAGAGTTTAAGCAAGTTGGTGACAAAGAACTGGGTTTGTTTGCAATTTTTGATGGCCATTCGAGTCAAAATATTCCCAACTATTTACAGTGCCATTTGTTTGAGAACATTTTAAATGAGCCTGATTTTTGGAGCGAACCGGCAAATGCAGTCAAGAAAGCATATCGTATGACAGATATGATCATTTTGGACAAGGCAGTGGACATGGGCAGGGGAGGATCGACTGCTGTTACGGCTATTTTGATTAATGGTCAGAAGCTGGTTGTAGGCAATATCGGAGATTCTCGTGCAATTATCTGTACAAATGGGGTGGCCGTGCAGTTATCAGTTGATCACGAGCCGAGCATTGAAAAGAATGAAATCGAGAGTAGAGGTGGCTTCGTTTTTTACGTGTCGATAACTGAATCAGGAGATGTGGCTCGAGTCGATGGGCAGCTGGCAGTGGCCAGAGCATTTGGTGACAAAAGCTTGAAGGAACATCTGAGCTCCGAACCTCATGTGGTAGAGGCAATGATCAAAGATGAGGCTGAGTTCATTATTTTAGCAAGTGATGGACTATGGAATGTGATGTCGAACCAAGAGGCTGCGGACTTGATCAAGGAGGTAAAGGATGCTCGGGCGGCCGCGAAGCAACTGACTGACGAGGCTCTTAAAAGGAGGAGCAAAGATGATATTTCTTGTATAGTTGTTAGATTTCAGTGA 864 43.87 MTGKEILNKMKEKVGLSSSDPDSGKGKSKMVKNITHGFHLVKGKSHHAMEDYVFAEFKQVGDKELGLFAIFDGHSSQNIPNYLQCHLFENILNEPDFWSEPANAVKKAYRMTDMIILDKAVDMGRGGSTAVTAILINGQKLVVGNIGDSRAIICTNGVAVQLSVDHEPSIEKNEIESRGGFVFYVSITESGDVARVDGQLAVARAFGDKSLKEHLSSEPHVVEAMIKDEAEFIILASDGLWNVMSNQEAADLIKEVKDARAAAKQLTDEALKRRSKDDISCIVVRFQ 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6826972 6829486 - Bda031117.1 Bda09g00516 12766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00516 287 PANTHER PROTEIN PHOSPHATASE 2C 39-RELATED 1 287 - -
Bda09g00516 287 Pfam Protein phosphatase 2C 46 279 IPR001932 -
Bda09g00516 287 ProSiteProfiles PPM-type phosphatase domain profile. 35 286 IPR001932 -
Bda09g00516 287 SMART PP2C_4 25 284 IPR001932 -
Bda09g00516 287 Coils Coil 246 269 - -
Bda09g00516 287 CDD PP2Cc 42 286 IPR001932 -
Bda09g00516 287 Gene3D - 29 287 IPR036457 -
Bda09g00516 287 MobiDBLite consensus disorder prediction 1 28 - -
Bda09g00516 287 SUPERFAMILY PP2C-like 31 286 IPR036457 -
Bda09g00516 287 MobiDBLite consensus disorder prediction 1 18 - -
Bda09g00516 287 PANTHER PROTEIN PHOSPHATASE 2C 1 287 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00223 Bda-Chr2:38172919 Bda09g00516 Bda-Chr9:6826972 2.57E-81 dispersed
Bda09g00516 Bda-Chr9:6826972 Bda09g01017 Bda-Chr9:40189384 1.39E-112 dispersed
Bda02g00423 Bda-Chr2:44850562 Bda09g00516 Bda-Chr9:6826972 2.44E-152 transposed
Bda07g00321 Bda-Chr7:4251434 Bda09g00516 Bda-Chr9:6826972 3.35E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00516 K17506 - jre:109013230 434.876