Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00524 ATGGCCCCGAGAGCCAGATCATCCGCGCCAGAACCAGACTCGGGTTCCGGCTGTAAGGAGATGAGATATCGAGGGGTGAGGAAGAGGCCATGGGGAAGATACGCAGCAGAGATTCGCGACCCTGGGAAAAAGACTCGGGTTTGGCTAGGGACGTTCGACACGGCGGACGAGGCGGCTCGTGCTTACGACGCAGCGGCGCGCGAGTTCCGTGGTTCCAAAGCCAAGACTAACTTCCCTACTCCGTCTGAGCTTGCCGGTTTGGATAACAATAACTTGACACGCAGTAGTCCTAGCCAGAGCAGCACCGTCGAATCGTCTTCTCCTCCGCCGTTAGACCTTACTCTTACTCCTATGTCCATCACCGCCGGTCGTTTCGCCGGAAGTTGCTACCCTCCTGTCGGTTTCGTGGCCGTTCCCGTGGCCCGTTCATTGTACTTTGACGCTTTCGGTCGGTCAGAGAAGATCGGAGTGAATCCCCGAGAAATGCAAATGTTTTATACCGCGATGGTAACTAATTCCCAGCCGATTACCATCGGTGGGACTCAGAGCGACTCCGATTCATCCTTGGTAGTAAATTTGAAGCGAACCCAGAATATTGTACGGCTAGATCTTGATCTTAACCAGCCTCCCCCACCTGAAGTGGCCTGA 648 54.94 MAPRARSSAPEPDSGSGCKEMRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTADEAARAYDAAAREFRGSKAKTNFPTPSELAGLDNNNLTRSSPSQSSTVESSSPPPLDLTLTPMSITAGRFAGSCYPPVGFVAVPVARSLYFDAFGRSEKIGVNPREMQMFYTAMVTNSQPITIGGTQSDSDSSLVVNLKRTQNIVRLDLDLNQPPPPEVA 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6930674 6931321 - Bda031126.1 Bda09g00524 12774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00524 215 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Bda09g00524 215 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Bda09g00524 215 PANTHER ERF FAMILY PROTEIN 1 202 - -
Bda09g00524 215 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Bda09g00524 215 MobiDBLite consensus disorder prediction 75 111 - -
Bda09g00524 215 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Bda09g00524 215 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 202 - -
Bda09g00524 215 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Bda09g00524 215 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Bda09g00524 215 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Bda09g00524 215 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Bda09g00524 215 MobiDBLite consensus disorder prediction 1 23 - -
Bda09g00524 215 MobiDBLite consensus disorder prediction 73 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00518 Bda-Chr2:46061727 Bda09g00524 Bda-Chr9:6930674 6.74E-33 dispersed
Bda07g00314 Bda-Chr7:4206083 Bda09g00524 Bda-Chr9:6930674 3.36E-94 dispersed
Bda09g00524 Bda-Chr9:6930674 Bda14g01413 Bda-Chr14:17652183 7.45E-32 dispersed
Bda09g00521 Bda-Chr9:6849162 Bda09g00524 Bda-Chr9:6930674 5.08E-131 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16383 PF00847 AP2 8.50E-15 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00524 K09286 - zju:107432496 208.379