Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00533 ATGAACAGAGTGAATAATTCTGATCGAGCTCGTGGCAATCCGTCTTGCAGCATTATTCCCTCTTCCTCCTCCACAACCGCAACCGGGGAGCTCTTTATCTGCTTCACTTCTAGACTGTCTTCTTCTTCGATGAAGATTTCTTCCAAATCTATCCTCAGTCCCGGCCATAGCAGAGACTCCTCGCAGGTGTCTCTCTCTACTTCTCTCAGCCGGAGGCTCAGAAACAGCGGCAGCTTGAAGGGAGGTCACGCGTCGCCGATGTTTCCGACTGGAGTGAAGAAAAGAGGGGTTGCTTTTGAGAATCCGGAACCGTCGTCTCCGAAAGTTACGTGCATAGGACAGATCAGGACGAAGACCAAGAAACAAGGGAAGAAGATGAGGAGCAGATCGAGAAAAATGGCGTCGGAAGCAAGTTTCCGGACAGAGAGTCAGTTTCAGATTCAGAATACTCGACCTGACGGTTTTCCGGCGCACCGGAATCAGAGGTGGGTGCATCTTCCATTGACGATCTGCGAAGCTTTACGTGGTTTCGGGACGGAGCTCCGCTGCTTCTTCCCATGTCGTTCGAGCGAGAGGGAGAGAGAAGAGAAAACGGAGAGATCTGGGAAATCGAGCTCCTGCGGAACTGTTTTTGCTAGGTGGTTGGTTTCTGTACAAGATGAAGAAGGAAAGGAGAGAGAGATAGAGCTGGTGGTCGGAGAGGAGGACAATGGTGGTCGGAGGAGGAATGTCTTTGAAGGAATGGAGTTCAAAGAAGGAGAAGAGAAGGGTGAGATTGTTGAGGAAGAAGGTGGAAGAGTCAGTATTTGTATACCCCCCAAGAATGCTTTGCTTTTGATGAGATGTAGATCGGATCCAGTGAAAATGGCGGCGCTAGCTAATCGGTTCTGGGAGTCACCCGCTCCGGTAATTGCAGACAATGTAGAGGAAGAAGTAGAAGAAGAGGAACAGTGCGAAACGGAAGGTGCTGCAGTAGACATGGAAAGAGAAGAAAACGGTCTGACTGAAATGGAGATTCGAGATAAAGAAGAAAACCTGATTTTGCAGGAGGAAGAGGATGTGAAAGACAAAGAAAGTCTATTGAAGGAGAAAGAGGAGAGTGAGGAAGTTGCAACGGAGAAAACAGTGATGGAAGAGACATTGGAGACGAACCAGCCTGGATGTGCAGAAGAAGCTGCTTCACCGGACGCCTGTTTTTCATCTGAAGAAATTTTAGATCCAGAAAAGCTGGAATTAGAAGAAAACGCCGAAAATGGTGAAGAAGAGCAGGAAAAAGGAGATGGGAACCGGAGAGAGCCAGAAGAAAAAATCCAGATTTCAGCCATTCCAGAAGCTATGGAGGAATCAACAGAAGAACAGAAAGCCACTCAAGAAAGATTCGAATCAGAAGATCCTGAGCCCGCAAAGCAAGAAACGGGTCCGACTAAGGAAGAAGAAGAAGAAGAAGAAGAAAAATCATTAAAGGAAGAGAAACGAAGCTCTGTTTTACCAGATTGCTTACTTTTAATGATGATAAGTGAACCAAAGCTTTCAATGGAGGTCTCGAAAGAGACTTGGGTTTGCAGCACAGACTTCATCAGACGCCCGCCGGAGACGGAGAAGAAGAAGAAGAAAAAGCCGGTCGAAAAAACCAACAACGGAGAAGAATCAGCTAAGCGTGTCAGCGTAGACAGGAAGTTTGAAAGGAGTAGGCAGCCATTGCTACAGCCTGCGAGGTCTTCTTGCTCCTTGCCAGCGCCGATTGGTCGGGTTGCCGGAGCAACCATTACGACGGCGAAAGATCAGAAGTTAGTGAACGGAAAGGCTTATGAGCCGTTTGTGCTGACGCGGTGCAAGTCGGAGCCGATGAGATCGGCAGCAAAACTAGCGCCGGAGGCTTGTTTCTGGAAAAATCGGAAGCTAGAGCCGCCGCCTCCGGCAACGCTGGGTGTTGGATTTTGA 1941 48.53 MNRVNNSDRARGNPSCSIIPSSSSTTATGELFICFTSRLSSSSMKISSKSILSPGHSRDSSQVSLSTSLSRRLRNSGSLKGGHASPMFPTGVKKRGVAFENPEPSSPKVTCIGQIRTKTKKQGKKMRSRSRKMASEASFRTESQFQIQNTRPDGFPAHRNQRWVHLPLTICEALRGFGTELRCFFPCRSSEREREEKTERSGKSSSCGTVFARWLVSVQDEEGKEREIELVVGEEDNGGRRRNVFEGMEFKEGEEKGEIVEEEGGRVSICIPPKNALLLMRCRSDPVKMAALANRFWESPAPVIADNVEEEVEEEEQCETEGAAVDMEREENGLTEMEIRDKEENLILQEEEDVKDKESLLKEKEESEEVATEKTVMEETLETNQPGCAEEAASPDACFSSEEILDPEKLELEENAENGEEEQEKGDGNRREPEEKIQISAIPEAMEESTEEQKATQERFESEDPEPAKQETGPTKEEEEEEEEKSLKEEKRSSVLPDCLLLMMISEPKLSMEVSKETWVCSTDFIRRPPETEKKKKKKPVEKTNNGEESAKRVSVDRKFERSRQPLLQPARSSCSLPAPIGRVAGATITTAKDQKLVNGKAYEPFVLTRCKSEPMRSAAKLAPEACFWKNRKLEPPPPATLGVGF 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7044046 7045986 + Bda031136.1 Bda09g00533 12783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00533 646 MobiDBLite consensus disorder prediction 422 438 - -
Bda09g00533 646 Coils Coil 340 368 - -
Bda09g00533 646 MobiDBLite consensus disorder prediction 407 421 - -
Bda09g00533 646 MobiDBLite consensus disorder prediction 522 575 - -
Bda09g00533 646 MobiDBLite consensus disorder prediction 48 89 - -
Bda09g00533 646 PANTHER CHLOROPLAST PROTEIN HCF243-RELATED 21 430 - -
Bda09g00533 646 PANTHER CHLOROPLAST PROTEIN HCF243-RELATED 422 646 - -
Bda09g00533 646 MobiDBLite consensus disorder prediction 1 24 - -
Bda09g00533 646 MobiDBLite consensus disorder prediction 328 497 - -
Bda09g00533 646 MobiDBLite consensus disorder prediction 48 75 - -
Bda09g00533 646 MobiDBLite consensus disorder prediction 527 565 - -
Bda09g00533 646 PANTHER CHLOROPLAST PROTEIN HCF243 422 646 - -
Bda09g00533 646 PANTHER CHLOROPLAST PROTEIN HCF243 21 430 - -
Bda09g00533 646 MobiDBLite consensus disorder prediction 117 143 - -
Bda09g00533 646 MobiDBLite consensus disorder prediction 447 475 - -
Bda09g00533 646 MobiDBLite consensus disorder prediction 328 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00533 - - - qsu:112013406 469.929
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00777 Bda09g00533 CCT
Bda05g00777 Bda09g00533 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00275 Bda-Chr1:27322875 Bda09g00533 Bda-Chr9:7044046 2.42E-10 dispersed
Bda03g00747 Bda-Chr3:6325984 Bda09g00533 Bda-Chr9:7044046 8.54E-10 dispersed
Bda05g00777 Bda-Chr5:56247794 Bda09g00533 Bda-Chr9:7044046 3.00E-34 dispersed
Bda09g00533 Bda-Chr9:7044046 Bda13g01380 Bda-Chr13:36465180 9.35E-11 dispersed
Bda09g00533 Bda-Chr9:7044046 Bda13g01406 Bda-Chr13:36759229 3.39E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g160 . . . Bda09g00533 . . . . Cmo16g00440 Cmo04g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00777 . . Bpe01g00452 Bma07g01161 . . . . Cma04g00557 Cma16g00408 Car04g00527 . . Cpe01g00500 . . . . . . . Cla05g00994 Cam05g1085 Cec05g1093 Cco05g1087 Clacu05g1079 Cmu05g1029 Cre05g1103 . . Chy06g01170 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008790 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00533 Bda_Chr09 FPKM 19.90979 22.963463 26.862249 26.430286 39.685688 37.542145 39.188679 26.403563 27.448929