Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00542 ATGCCTGGGAACAAGTACAACGGTAATTTAAATTACATTCAAGACCGTATTCCAGGTCGAGTAGAAAGGCTACTGAGAGAAAGAGAGCTAAGAAAAAGCATTAGAGCTTCACATTCCAACGAGACAAATGACAGTACTAGAGAAGCTGACTTAATTGAGCGTAACCTGCGCTTGAGAGATGAAGATAACTCTGACATTTCGTGTGTTGAAAAATTCTTGGAATCTTCAGCACCTAATCTAGCTTTTACTGAGGGATGTGAACGCCAAGATGGGAAGGCTCTTAAACAAAGACTGCTGGTTGTGGCTAACAGGCTGCCAGTTTCTGCAGTTAGGAGAGGAGAAGACTGCTGGTCTCTGGAAATAAGCGCTGGGGGTCTAGTCAGTGCACTTCTAGGTGTGAAGGAGTTTGAGGCAAGATGGATTGGTTGGGCCGGAGTGAATGTGCCTGATGTGATTGGGCAGAAGGCTCTCACTAGAGCTTTAGCTGAAAAGAGCTGTATTCCCGTTTTCCTGGATGAAGAAATTGTAGATCGATATTACAATGGCTACTGCAACAATATTTTGTGGCCTCTTTTTCATTACCTTGGACTTCCACAAGAAGATCGTCTAGCCACCACCCGCAGTTTTCAGTCTCAGTTTGCAGCATATAAAAAGGCAAATCAAATGTTTGCTGATGTGGTTAATATGCACTACGAAGAGGGCGATGTTGTTTGGTGCCATGATTACCATCTTATGTACCTCCCAAAATGTCTAAAAGAACATAACAGCAAAATGAAAGTCGGATGGTTTCTTCATACTCCATTTCCTTCTTCTGAAATTCACAGGACGCTACCGTCTCGATCTGAGCTGCTGCTTTCTGTACTAGCAGCCGATTTAGTAGGTTTTCATACTTATGACTATGCCCGTCATTTCGTAAGTGCTTGTACACGTATTTTGGGACTTGAGGGTACACCAGAAGGTGTTGAAGATCAAGGGAAGCTAACTCGAGTAGCTGCGTTTCCTATTGGAATAGACTCTGATCGTTTCACTCGTGCACTTGAGGTTCCCCAAGTTCAGGAACATATAAAAGAGTTAAAGGAAAGGTTTAAAGGACGAAAGGTAATGTTAGGTGTTGATCGACTTGATATGATTAAAGGAATTCCTCAAAAGATATTGGCATTTGAAAAATTTTTGGAAGAAAACCCTACTTGGCGTGATAAAGTTGTTTTGTTGCAAATTGCCGTGCCAACAAGAACAGACGTTCCAGAGTATCAAAAATTAACAAGTCAGGTTCATGAAATTGTTGGACGTATAAATGGACGATTCGGTACATTGACAGCTGTTCCTCTTCATCATTTGGATCGTTCACTTGACTTTCATGCCTTATGTGCTCTATATGCCGTTACTGATGTAGCATTAGTCACATCTTTAAGGGATGGAATGAATCTCGTCAGCTATGAGTTTGTGGCTTGCCAAGATGCAAAGAAAGGGGTGCTCATTCTAAGCGAGTTTGCTGGGGCTGCACAGTCCTTGGGAGCTGGAGCTCTTCTAGTTAACCCTTGGAACATAACTGAAGTTGCAAAATCAATTGACCGCGCATTGAATATGACTGCTGAGGAGAGAGAGAAACGTCATAGACATAATTTTCATCATGTGACAACACACACTGCTCAGGAGTGGGCCGAAACTTTTGTAAGTGAACTGAATGATACAGTTGTTGAAGCTGAACTGAGGATAAGACAAGCACCGCCCCCGCTTCCTTTTGAGGATGCTATAAAACATTATTTGAGGTCCAATAATCGATTACTTATATTGGGATTTAATTCTACACTAACAGAACCAGTGGACACACCTGAGAGAAGAGGTGATCAAATTAGAGAAATGGAACTGAAATTGCACCCAGACTTGAAAGAGTCATTAACCACTCTCTGCCGAAATACGAGGACTACCATTGTTATCCTTAGTGGGAGTGACAGAGCAGTCTTAGATGAGAACTTTGGGAACTATAACATGTGGTTGGCTGCTGAAAATGGTATGTTTCTACGTTTTACCAAGGGAGATTGGATGACTACGATGCCAGAACATCTGAATATGGAATGGGTCGACAGTGTTAAGCATGTTTTCGAGTATTTCACGGAAAGAACACCTCGTTCACATTTTGAACCACGGGAAACTTCACTTGTGTGGAATTATAAATATGCGGATGTTGAATTTGGGAGGCTTCAAGCGAGGGATATGTTGCAGCATCTCTGTACAGGCCCAATTTCTAATGCATCTGTCGATGTTGTTCAAGGTAGTCGCTCTGTCGAGGTGCGAGCAGTTGGTGTTACAAAGGGTGCAGCAATCGACCGAATACTAGGAGAGATTGTTCACAGTAAATCGATGACAACCCCAATAGATTATGTCCTGTGCATAGGGCATTTTCTTGGCAAGGACGAGGATGTGTACACTTTCTTTGAGCCTGAGCTTCCTTCTGATACCATAAGTCTAGGAAGAACCAAGGCAATGGATGGACTTAAATTGTCTAGTGAGAGAAGATCTGCTTTGAAGCTCCCACCCAACAGAAATGGCTCAAAATCATCTCACACTTGTAAGGCCAGGCATTTGCCAAATTCAGAGAGAACTCCAGCCAACCACCTCTGTGGAAACGGAAAAAAGCAGTCCCCTGAGAAGATTCAGTGGAACGTGCTTGATCTCAAAGCCGAGAATTACTTCTCTTGTGCCATTGGCCGGACCCGCACCAGTGCTCGATATCTTCTCGGATCGTCTGACGATGTCGTAGCGTTTCTTAAGGAGCTTTCTTATGCAGTAGCACTATCCCATGCTTGA 2808 43.09 MPGNKYNGNLNYIQDRIPGRVERLLRERELRKSIRASHSNETNDSTREADLIERNLRLRDEDNSDISCVEKFLESSAPNLAFTEGCERQDGKALKQRLLVVANRLPVSAVRRGEDCWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDVIGQKALTRALAEKSCIPVFLDEEIVDRYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNMHYEEGDVVWCHDYHLMYLPKCLKEHNSKMKVGWFLHTPFPSSEIHRTLPSRSELLLSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSDRFTRALEVPQVQEHIKELKERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPTWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPLHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDAKKGVLILSEFAGAAQSLGAGALLVNPWNITEVAKSIDRALNMTAEEREKRHRHNFHHVTTHTAQEWAETFVSELNDTVVEAELRIRQAPPPLPFEDAIKHYLRSNNRLLILGFNSTLTEPVDTPERRGDQIREMELKLHPDLKESLTTLCRNTRTTIVILSGSDRAVLDENFGNYNMWLAAENGMFLRFTKGDWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFEPRETSLVWNYKYADVEFGRLQARDMLQHLCTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDTISLGRTKAMDGLKLSSERRSALKLPPNRNGSKSSHTCKARHLPNSERTPANHLCGNGKKQSPEKIQWNVLDLKAENYFSCAIGRTRTSARYLLGSSDDVVAFLKELSYAVALSHA 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7106034 7115660 - Bda031146.1 Bda09g00542 12792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00542 935 Gene3D - 687 767 - -
Bda09g00542 935 Pfam Trehalose-phosphatase 620 816 IPR003337 GO:0003824|GO:0005992
Bda09g00542 935 Gene3D - 621 781 IPR023214 -
Bda09g00542 935 CDD HAD_TPP 595 828 - -
Bda09g00542 935 Gene3D Glycogen Phosphorylase B; 89 343 - -
Bda09g00542 935 Gene3D Glycogen Phosphorylase B; 344 546 - -
Bda09g00542 935 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 97 562 IPR012766 GO:0003825|GO:0005992
Bda09g00542 935 MobiDBLite consensus disorder prediction 842 880 - -
Bda09g00542 935 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 32 927 - -
Bda09g00542 935 SUPERFAMILY HAD-like 594 926 IPR036412 -
Bda09g00542 935 CDD GT20_TPS 97 562 IPR001830 GO:0003824|GO:0005992
Bda09g00542 935 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 96 565 - -
Bda09g00542 935 Pfam Glycosyltransferase family 20 97 562 IPR001830 GO:0003824|GO:0005992
Bda09g00542 935 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 32 927 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g00245 Bda-Chr7:3136314 Bda09g00542 Bda-Chr9:7106034 0 dispersed
Bda09g00542 Bda-Chr9:7106034 Bda11g00014 Bda-Chr11:210111 3.50E-128 dispersed
Bda09g00542 Bda-Chr9:7106034 Bda08g00635 Bda-Chr8:6534025 1.89E-141 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00542 K16055 - csv:101204478 1615.9