Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00547 ATGAGGAGCTCCATTCTTCTTGTCACTTGCATAACACTTGCAGTCACTTACTCTCTCCATCTTCAAGCTTATGCTGCTCCTGCTGGGCCATTAATTAGACACTTGTCTTCCCTTCTTAAATGGACCAGGTCCGCTTCCAAACCATTCCAAACAGATGGAAATGTTCTTCAATTTGAGAATGGGTACTTAGTCGAAACTGTTGTAGAGGGCAATGACATTGGTGTGGTTCCTTACCAGATTCGTGTCTCTGAAGATGGTGAACTTTATGCTGTCGATTCGGTTAATAGCAATATTGTCAAGATTACTCCACCATTGTCCCAGTATAGTAGAGCAAGATTAGTGGCTGGGTCATTTCAAGGTTACACAGGGCACACTGATGGTAAACCGAGTGAATCTCGTTTTAATCATCCAAAGGGCGTAACAATGGATGATAGAGGAAATGTATATGTTGCTGATACTTTAAATCTTGCCATCAGAAAGATCAGCGACTCTGGGGTGACAACTATTGCAGGTGGCAAATCAAATGTGGCAGGGTACAGGGATGGGCCCAGTGAAGATGCAAAGTTCTCAAATGATTTTGATGTGCTTTATGTCCGGCCCACCTGTTCCTTGTTAGTTGTCGACAGAGGAAATGCCGCACTTCGACAGATCTCTCTAAATCAGGACGATTGCGATTTTGAATCCAGTTCAATTTCTTCAACAGATATCCTAATGGTTATTGGTGCAGTTATATTCGGATATGCCACATTTATGCTTCAACAGGGCTTTGGATCCTCGTTTTCGGCTAAACCGCAGCAATCTCTAGAGAGTGAATTCAAAGAACAACCAATGAAGGAAAACATCACCTCTGTCGTCGATACAACGAAAGAGGAGCCTGGATGGCCGTCTTTTGGTCAGCTCCTCATCGATCTATCCAAGCTAGCACTCGAAGCAACGGCCGGCATTTTTCTCTCCTTTGTCCCAGCTCGATTCAGACCTGATAGCCCCAAGAAGGGTCTCACTCCATTGAAAGACAGGCTCAAAATGCCTGAAGATGAACCCAGTTCTCCAAGGGCTCTACGACAGAACACTCCAACTCCACTTGCCGAAGCCCGTCGAGTCCATTCTCCGAATGTGCCCGAAAAGTTTTCTGAAACGAAGCCTCCAAAACTGAAATCAAGCAGCTTTAAGGACCCGTCTTTGTCAAACAAGCACAGGGCTTCAAAACGGCAAGAATTTGCAGAGTTTTACGGACCAAGCGAAGTCCCTCCTCATAGCAGGTCCAAGAGCCAGAAGGAGAGGCCAAGGCATCGGCCGCGAGAAAAGAGTGGAGAGGTCGCTTTCGGATCGGAGCAGCCAAAGCCGTCGGAGATGAAGCAAGTTGATTACGAAAATCCAAGGTTTGAGCAGTACAATGTGAGGAATAGATATGGATCAAACGCTCCTTTCCACTTCTGA 1437 45.86 MRSSILLVTCITLAVTYSLHLQAYAAPAGPLIRHLSSLLKWTRSASKPFQTDGNVLQFENGYLVETVVEGNDIGVVPYQIRVSEDGELYAVDSVNSNIVKITPPLSQYSRARLVAGSFQGYTGHTDGKPSESRFNHPKGVTMDDRGNVYVADTLNLAIRKISDSGVTTIAGGKSNVAGYRDGPSEDAKFSNDFDVLYVRPTCSLLVVDRGNAALRQISLNQDDCDFESSSISSTDILMVIGAVIFGYATFMLQQGFGSSFSAKPQQSLESEFKEQPMKENITSVVDTTKEEPGWPSFGQLLIDLSKLALEATAGIFLSFVPARFRPDSPKKGLTPLKDRLKMPEDEPSSPRALRQNTPTPLAEARRVHSPNVPEKFSETKPPKLKSSSFKDPSLSNKHRASKRQEFAEFYGPSEVPPHSRSKSQKERPRHRPREKSGEVAFGSEQPKPSEMKQVDYENPRFEQYNVRNRYGSNAPFHF 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7172541 7175893 + Bda031154.1 Bda09g00547 12797

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00547 478 PANTHER - 13 478 - -
Bda09g00547 478 MobiDBLite consensus disorder prediction 328 460 - -
Bda09g00547 478 SUPERFAMILY NHL repeat 72 218 - -
Bda09g00547 478 MobiDBLite consensus disorder prediction 368 385 - -
Bda09g00547 478 MobiDBLite consensus disorder prediction 330 348 - -
Bda09g00547 478 PANTHER NHL DOMAIN-CONTAINING PROTEIN 13 478 - -
Bda09g00547 478 Gene3D - 46 219 IPR011042 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00547 - - - qsu:112021898 725.317
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01661 Bda-Chr1:52727922 Bda09g00547 Bda-Chr9:7172541 2.53E-07 dispersed
Bda09g00547 Bda-Chr9:7172541 Bda14g01150 Bda-Chr14:10680784 3.21E-72 dispersed
Bda09g00547 Bda-Chr9:7172541 Bda01g02227 Bda-Chr1:58091049 4.90E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g92 . . . Bda09g00547 . Bpe08g00989 . . . Cmo04g00713 . . . . . . Cpe02g00663 . . . . . . . . . . . . . . Cone6ag0200 Cone9ag0231 . . . . . . . . . . . . . . . . . Cma04g00666 . . . . Cpe01g00601 . . . . . . . . . . . . . . . Csa04g00813 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002564 1 4 1 1 1 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00547 Bda_Chr09 FPKM 26.919094 22.284273 4.69417 5.597373 3.172152 0.732212 2.28537 20.516361 23.080248