Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00603 TCCATGGAGACCGAGGAGTACAGAGAGGAAAACCTGGTTGTCAGGGAGTTTCACGCAAATGGAGTTTTCATTAAAACAACAGAAGTTGAGGCAAAGCTAGATGAGGGAAATATTCAAGAGGCCGAATCTTCCTTGCGGGAAGGATTATCATTGAATTTTGAGGAAGCAAGAGCTCTTCTTGGAAAGTTGGAGTATCAAAGAGGTAATGTGGAAGGTGCTCTTCGTGTGTTCGATGGCATTGATCTCCAAGCAGCAATTCAGAGATTGCAGCCTTCTCTTACTGAAAAAATGCCATCCAAAAAGGGCCGTCCTCGCACAGATTCGCAGCATGGAGTCTCTCAGCATGCTGCTAACCTGGTACTTGAAGCCATATATTTAAAAGCAAAGTCTCTTCAAAAGCTTGGGAAATTAACTGAGGCTGCTCATGAGTGTAAAAATGTGCTTGATGCTGTGGAGAAGATATTCTATCTTGGCATTCCCGATGTGCAAGTTGACAATAGATTGCAAGAGACAATAAGTCAAGCTGTTGAGCTTCTTCCAGAGCTTTGGAAACGGGGGGGTTGCTACCAGGAAGCAGTTTCTGCCTATCGACGAGCGCTCTTGAGCCAATGGAACCTCGATAATGATTGCTCTGCAAGGATTCAGAAAGGATTTGCTGTCTTTCTGCTTTATGGAGGGGTAGAAGCTAGCCCTCCTAGTTTAGCAGTTCAGGTTGAAGGCTCATATATTCCCAAAAACAATATGGAAGAGGCAATTCTACTTCTGATGATTCTTATGAGGAAATTTTTCCTTGGTAAGATCAACTGGGATCCATCAGTAATGGAGCATCTAACATTTGCATTATCTTTATGCAGCCAAACTTCTGTTTTAGCTAAACAATTTGAAGAAATCATGCCTGGAGTATATCCCCGTGTGGATATTTGGAAGTCTTTAGCTCTGTGTTACAGTGGAGCAGGACAAAATAAATCTTCCTTAAACCTGTTGAGAAAGTCCTTACACAAACATGAAACACCAGAGGATTTACTGGCATTGTTAGTGGCTGCAAAGATCTGCAGTGAAGATTCTTACCTTGCTGCTGAAGGAGTTGGCTATGCCCGAAGGGCAGTAAGTAATGCAGTAGGGAAAGAAGAGCATTTGAAGAGTGTGGGCCTTCGAATGTTGGGTCTTTGTTTGGGAAAGCAAGCTAAGCTATCCTCCTCTGATTTTGAGAGGTCCCGCCTTCAGTCTGAGGCTTTGAAATCTCTAGATCAGGCAGCTTCTCTGGAGCGAAATAATTCCGATTTAAGTTTTGAATTGGGAGTTCAATATGCAGAACACAGGAATTTGACTGCGGCTTTGCATTATGCAAAGAAATATATTGATAAAACCGGTGGTTCTGTCTTAAAAGGCTGGAAATTGCTTGCTCTTGTGCTGTCTTCTCAAAAAAGATTTGCAGAGGCTGAAGTAGTTACTGATGCAGCTTTAGATGAGACTGCAAAATGGGAGCAAGGACCGCTCTTCATGCTTAAAGCCAGGCTGAAGATATCTCAGTCACTACACATGGACGCTATTGAAACTTATCGATACCTCCTAGCATTAGTTCAAGCTCAAAGAAAATCGTTTGGACCACTTAAACTTCCAAATCGGGTTGAAGATGATAAGGTCAACGAATTTGAAATATGGCAAGGCTTGGCCAACTTATACGCCAGCCTTTCACATTGCAAAGATGCAGAGATATGTTTGGGAAAAGCTAGAGAGCTGAAACAATACTCGGCCGAAACGCTTCATACACAAGGCAATGGACAAATTCCAGAAGCTCTTACTGCTTATATTAATGCTCTACTATTTGAGCCTGATTATGTTCCTTGCAAGATATTGATCAGTGCCCTTTTGACCAAAACCAGTTCAAAGTCGTTGCCAATTGTAAAATGCTTACTTTCCGACGCATTGAGGATCGATCCAACCAATAAGAAGGCGTGGTATTATTTGGGAATGATTCATAGGGACGACGGGAGAACAGCCGATGCTATCGATTGTTTTCAGGCAGCTTCGATGCTTGAAGAATCCGATCCAATCCAAAGTTTTGCCTCTATTCTC 2076 42.58 SMETEEYREENLVVREFHANGVFIKTTEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPSLTEKMPSKKGRPRTDSQHGVSQHAANLVLEAIYLKAKSLQKLGKLTEAAHECKNVLDAVEKIFYLGIPDVQVDNRLQETISQAVELLPELWKRGGCYQEAVSAYRRALLSQWNLDNDCSARIQKGFAVFLLYGGVEASPPSLAVQVEGSYIPKNNMEEAILLLMILMRKFFLGKINWDPSVMEHLTFALSLCSQTSVLAKQFEEIMPGVYPRVDIWKSLALCYSGAGQNKSSLNLLRKSLHKHETPEDLLALLVAAKICSEDSYLAAEGVGYARRAVSNAVGKEEHLKSVGLRMLGLCLGKQAKLSSSDFERSRLQSEALKSLDQAASLERNNSDLSFELGVQYAEHRNLTAALHYAKKYIDKTGGSVLKGWKLLALVLSSQKRFAEAEVVTDAALDETAKWEQGPLFMLKARLKISQSLHMDAIETYRYLLALVQAQRKSFGPLKLPNRVEDDKVNEFEIWQGLANLYASLSHCKDAEICLGKARELKQYSAETLHTQGNGQIPEALTAYINALLFEPDYVPCKILISALLTKTSSKSLPIVKCLLSDALRIDPTNKKAWYYLGMIHRDDGRTADAIDCFQAASMLEESDPIQSFASIL 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8754309 8759183 + Bda034109 Bda09g00603 12853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00603 692 MobiDBLite consensus disorder prediction 93 112 - -
Bda09g00603 692 Gene3D Tetratricopeptide repeat domain 26 204 IPR011990 GO:0005515
Bda09g00603 692 SMART tpr_5 305 338 IPR019734 GO:0005515
Bda09g00603 692 SMART tpr_5 121 154 IPR019734 GO:0005515
Bda09g00603 692 SMART tpr_5 461 494 IPR019734 GO:0005515
Bda09g00603 692 SMART tpr_5 650 683 IPR019734 GO:0005515
Bda09g00603 692 SMART tpr_5 551 584 IPR019734 GO:0005515
Bda09g00603 692 ProSiteProfiles TPR repeat profile. 650 683 IPR019734 GO:0005515
Bda09g00603 692 SUPERFAMILY TPR-like 121 447 IPR011990 GO:0005515
Bda09g00603 692 Gene3D Tetratricopeptide repeat domain 637 689 IPR011990 GO:0005515
Bda09g00603 692 PANTHER CALMODULIN-BINDING PROTEIN 5 691 - -
Bda09g00603 692 Coils Coil 404 424 - -
Bda09g00603 692 Gene3D Tetratricopeptide repeat domain 268 630 IPR011990 GO:0005515
Bda09g00603 692 PANTHER PROTEIN NPG1 5 691 IPR043376 -
Bda09g00603 692 SUPERFAMILY TPR-like 409 681 IPR011990 GO:0005515
Bda09g00603 692 SUPERFAMILY TPR-like 500 626 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00593 Bda-Chr1:32937129 Bda09g00603 Bda-Chr9:8754309 3.92E-178 dispersed
Bda05g00866 Bda-Chr5:57134533 Bda09g00603 Bda-Chr9:8754309 0 dispersed
Bda07g00201 Bda-Chr7:2411668 Bda09g00603 Bda-Chr9:8754309 0 dispersed
Bda09g00603 Bda-Chr9:8754309 Bda13g00048 Bda-Chr13:681565 0 dispersed
Bda09g00595 Bda-Chr9:8496964 Bda09g00603 Bda-Chr9:8754309 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00603 K21843 - csv:101206641 1072.38