Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00660 ATGGAAGCTCCGAAGTATTTCCAGACCGATTTCCGCTCACAGTTGCTGAACGAAAGTCGCCACTCAGACACTAAGACGGTCGGATATAACGACAGTTTTATCGTCGAGGAACTCCTCGACTTCTCAAACGATGAAATGGCATTGCTCGACGCTAATGGCTCTTTTGATTGCCTCAATGTCAGCTCCACTGACTCGTCCACCGTCTCCCTCCTCGACAGCTCAAATTCTTCTTCGTTTTCTGGCTGTGAACCAGCGTCTTTCCCCGGTGATTTTGCCGCTGACGTTCAATTCTCCAGTTATTTCTGTGTTGCGTATGACGATTTGGCGGAGCTCGAATGGCTTTCGAATTTCGCTGAGGAATCATTCTCCAGCGAAGATTTGCAGAAGCTCCAGCTGATATCAGGCATGAAAGCAGTCCAACCCGATGACACCGGCCGAAACTTCCCGGTGTTCCACTCTGACGTCTCTGTGCCGGCAAAGGCGCGTAGTAAGCGATCGCGTGCCGCGCCATGCATATGGACTTCTAGTCTCCCCTCACTTTCTCCGATGTCTTCATCCTCGGAAACCGACATTGTAGCTCCGGTGCCACCGCATCCCGCTAAAAAAGCAGGGAGAGCATCGCCAAACGGGAAGTCATCTTGCAACGGAGCATCAGAAAGAACGGGAGAGGGCCGGAAGTGCCTGCATTGCAACACCGATCAGACGCCGCAGTGGCGAACAGGACCAATGGGTCCGAAGACTCTCTGCAATGCTTGCGGCGTCCGGTTCAAATCCGGGAGACTGGTGCCGGAGTACCGGCCGGTAGCCAGCCCGACATTCGTGCTGAAAAGCACTCAAACTCGCGTCGAAAAGTGA 855 53.45 MEAPKYFQTDFRSQLLNESRHSDTKTVGYNDSFIVEELLDFSNDEMALLDANGSFDCLNVSSTDSSTVSLLDSSNSSSFSGCEPASFPGDFAADVQFSSYFCVAYDDLAELEWLSNFAEESFSSEDLQKLQLISGMKAVQPDDTGRNFPVFHSDVSVPAKARSKRSRAAPCIWTSSLPSLSPMSSSSETDIVAPVPPHPAKKAGRASPNGKSSCNGASERTGEGRKCLHCNTDQTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPVASPTFVLKSTQTRVEK 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10022436 10023433 + Bda031305.1 Bda09g00660 12910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00660 284 CDD ZnF_GATA 226 273 IPR000679 GO:0006355|GO:0043565
Bda09g00660 284 ProSiteProfiles GATA-type zinc finger domain profile. 221 257 IPR000679 GO:0006355|GO:0043565
Bda09g00660 284 MobiDBLite consensus disorder prediction 181 224 - -
Bda09g00660 284 PANTHER GATA TRANSCRIPTION FACTOR 1 275 - -
Bda09g00660 284 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 278 - -
Bda09g00660 284 Pfam GATA zinc finger 227 260 IPR000679 GO:0006355|GO:0043565
Bda09g00660 284 Gene3D - 221 272 IPR013088 GO:0006355|GO:0008270
Bda09g00660 284 PANTHER GATA TRANSCRIPTION FACTOR 1 275 - -
Bda09g00660 284 SMART GATA_3 221 271 IPR000679 GO:0006355|GO:0043565
Bda09g00660 284 ProSitePatterns GATA-type zinc finger domain. 227 252 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00882 Bda-Chr4:58587324 Bda09g00660 Bda-Chr9:10022436 3.19E-49 dispersed
Bda09g00212 Bda-Chr9:2996227 Bda09g00660 Bda-Chr9:10022436 0 dispersed
Bda09g00660 Bda-Chr9:10022436 Bda06g00964 Bda-Chr6:27255148 7.16E-36 dispersed
Bda11g01866 Bda-Chr11:53740682 Bda09g00660 Bda-Chr9:10022436 1.67E-12 dispersed
Bda14g01009 Bda-Chr14:8478854 Bda09g00660 Bda-Chr9:10022436 6.23E-11 dispersed
Bda09g00660 Bda-Chr9:10022436 Bda10g00830 Bda-Chr10:42690265 8.41E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16387 PF00320 GATA 1.30E-15 CL0167 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00660 - - zju:107420464 293.893