Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda09g00660 | ATGGAAGCTCCGAAGTATTTCCAGACCGATTTCCGCTCACAGTTGCTGAACGAAAGTCGCCACTCAGACACTAAGACGGTCGGATATAACGACAGTTTTATCGTCGAGGAACTCCTCGACTTCTCAAACGATGAAATGGCATTGCTCGACGCTAATGGCTCTTTTGATTGCCTCAATGTCAGCTCCACTGACTCGTCCACCGTCTCCCTCCTCGACAGCTCAAATTCTTCTTCGTTTTCTGGCTGTGAACCAGCGTCTTTCCCCGGTGATTTTGCCGCTGACGTTCAATTCTCCAGTTATTTCTGTGTTGCGTATGACGATTTGGCGGAGCTCGAATGGCTTTCGAATTTCGCTGAGGAATCATTCTCCAGCGAAGATTTGCAGAAGCTCCAGCTGATATCAGGCATGAAAGCAGTCCAACCCGATGACACCGGCCGAAACTTCCCGGTGTTCCACTCTGACGTCTCTGTGCCGGCAAAGGCGCGTAGTAAGCGATCGCGTGCCGCGCCATGCATATGGACTTCTAGTCTCCCCTCACTTTCTCCGATGTCTTCATCCTCGGAAACCGACATTGTAGCTCCGGTGCCACCGCATCCCGCTAAAAAAGCAGGGAGAGCATCGCCAAACGGGAAGTCATCTTGCAACGGAGCATCAGAAAGAACGGGAGAGGGCCGGAAGTGCCTGCATTGCAACACCGATCAGACGCCGCAGTGGCGAACAGGACCAATGGGTCCGAAGACTCTCTGCAATGCTTGCGGCGTCCGGTTCAAATCCGGGAGACTGGTGCCGGAGTACCGGCCGGTAGCCAGCCCGACATTCGTGCTGAAAAGCACTCAAACTCGCGTCGAAAAGTGA | 855 | 53.45 | MEAPKYFQTDFRSQLLNESRHSDTKTVGYNDSFIVEELLDFSNDEMALLDANGSFDCLNVSSTDSSTVSLLDSSNSSSFSGCEPASFPGDFAADVQFSSYFCVAYDDLAELEWLSNFAEESFSSEDLQKLQLISGMKAVQPDDTGRNFPVFHSDVSVPAKARSKRSRAAPCIWTSSLPSLSPMSSSSETDIVAPVPPHPAKKAGRASPNGKSSCNGASERTGEGRKCLHCNTDQTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPVASPTFVLKSTQTRVEK | 284 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 10022436 | 10023433 | + | Bda031305.1 | Bda09g00660 | 12910 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda09g00660 | 284 | CDD | ZnF_GATA | 226 | 273 | IPR000679 | GO:0006355|GO:0043565 | |
Bda09g00660 | 284 | ProSiteProfiles | GATA-type zinc finger domain profile. | 221 | 257 | IPR000679 | GO:0006355|GO:0043565 | |
Bda09g00660 | 284 | MobiDBLite | consensus disorder prediction | 181 | 224 | - | - | |
Bda09g00660 | 284 | PANTHER | GATA TRANSCRIPTION FACTOR | 1 | 275 | - | - | |
Bda09g00660 | 284 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 221 | 278 | - | - | |
Bda09g00660 | 284 | Pfam | GATA zinc finger | 227 | 260 | IPR000679 | GO:0006355|GO:0043565 | |
Bda09g00660 | 284 | Gene3D | - | 221 | 272 | IPR013088 | GO:0006355|GO:0008270 | |
Bda09g00660 | 284 | PANTHER | GATA TRANSCRIPTION FACTOR | 1 | 275 | - | - | |
Bda09g00660 | 284 | SMART | GATA_3 | 221 | 271 | IPR000679 | GO:0006355|GO:0043565 | |
Bda09g00660 | 284 | ProSitePatterns | GATA-type zinc finger domain. | 227 | 252 | IPR000679 | GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda04g00882 | Bda-Chr4:58587324 | Bda09g00660 | Bda-Chr9:10022436 | 3.19E-49 | dispersed | |
Bda09g00212 | Bda-Chr9:2996227 | Bda09g00660 | Bda-Chr9:10022436 | 0 | dispersed | |
Bda09g00660 | Bda-Chr9:10022436 | Bda06g00964 | Bda-Chr6:27255148 | 7.16E-36 | dispersed | |
Bda11g01866 | Bda-Chr11:53740682 | Bda09g00660 | Bda-Chr9:10022436 | 1.67E-12 | dispersed | |
Bda14g01009 | Bda-Chr14:8478854 | Bda09g00660 | Bda-Chr9:10022436 | 6.23E-11 | dispersed | |
Bda09g00660 | Bda-Chr9:10022436 | Bda10g00830 | Bda-Chr10:42690265 | 8.41E-69 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16387 | PF00320 | GATA | 1.30E-15 | CL0167 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda09g00660 | - | - | zju:107420464 | 293.893 |