Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00683 ATGGTTGATGTAGCTGACAAATTAGCGTATTTTCAAGCAATAACAGGCGTAGAAGATCCTGATTTCTGCACGGAGATCCTTGCCGCTCATGGCTGGGACCTCGAGCTTGCGATCTCCTCTTTCACTGACGATTCGGACCGTCCTGAGACTTCTGGCGCCGCGGACACGAGTATTGGCTTTGAAGAATCCGGTGGTATCCCGCATTCTGGCGTTGAATCGTCACAAACCCTAAATAGATCCGACGAGTTGGTTGAGAATAGGGTGGCTGGCCCCGGTTTGGCATGGAAACTTATAACGCTTCCGATTTCTGTGGTTTCTGGTAGTTTAGGGTTAGTATCTAATGCGATTGGGTTCGGCTTATGGGCTGCCGGTGGTGTACTTTCGTATTCGCTAGGGATGATTGGGTTCAGCTCTGCTTCGGGCCCTAATGCTGATTCGTCTGCTCCCTTGGTTTCCGTGTCTGCCTCGGCATCGGAAGCGATGAACTTTGTGGCAGCCTTTGAAAGGGATTATGGGACGAATCGTCCAAATTTTGTGCATGAAGGGTTTATGGACGCGTTGCAAAGATCAAGAAATGAATTTAAATTACTGTTTGTGTACCTGCACTCGCCAGATCATCCAGACACGCCATTTTTCTGCCAGAAGACTCTATGCTCGGAGATTCTAGCAGCGTTCGTGAACGAGAATTTCGTGTCGTGGGGAGGAAGTATACGGGCCAGTGAAGGTTTCAAGATGAGCAATAGCTTGAAAGCTTCCCGTTTTCCATTTTGTGCTGTGGTCATGGCAGCAACGAATCAAAGAATCGCATTGCTCCAGCAGGTAGGTTTCTTTGTTATTTGTAGAGTCTCAACCCTTCCTTTTTTGCTTATGCAGGTTGAGGGAACAAAATCTGCAGAAGAAATGCTTGCAATATTGCAGAAAGTTCTCGAAGACAGTGCCCCAGTTCTTGTTGCAGCAAGGCTTGATGCAGAAGAACGAAGAAATAACATGCGCTTGAGAGAGGAGCAAGATGCTGCTTACAGAGCAGCTCTTGAAGCTGATCAAGCAAGGGAACGGCAGAGGAGAGAGGAACAAGAACGCCAGCAAAGGGAAGCTGCTGAGTCTGAGAGGAAACAGAAGAAGGAAGAAGAAGCTCGTGCAAGAGCAGCCCTTGAAGCTGCCGAGAAAGAGGCCGCCAGGGCTAGAATCCGGCAGGAGAAAGCAACGTCACTTGGCACTGAACCTGAAAAAGGACCCAACGTCACACATGTTTTGGTACGGTTTCCAACTGGAGAACGAAAAGAACGGAGATTTTACAGCACTTCTACTATCGGGTCTATATATGACTATATTGATTCTTTGGGTTGTTTAGAGATTGAGGATTATAGCCTCGTCTCAAACTTCCCTCGAGTTATTTATGGCCCAGAGAAGTATTTGATGTCTTTGAAAGAAGCCGGATTACACCCTCAGGCAAGCCTTTTTGTCGAGCTGAACTCGTGA 1479 47.67 MVDVADKLAYFQAITGVEDPDFCTEILAAHGWDLELAISSFTDDSDRPETSGAADTSIGFEESGGIPHSGVESSQTLNRSDELVENRVAGPGLAWKLITLPISVVSGSLGLVSNAIGFGLWAAGGVLSYSLGMIGFSSASGPNADSSAPLVSVSASASEAMNFVAAFERDYGTNRPNFVHEGFMDALQRSRNEFKLLFVYLHSPDHPDTPFFCQKTLCSEILAAFVNENFVSWGGSIRASEGFKMSNSLKASRFPFCAVVMAATNQRIALLQQVGFFVICRVSTLPFLLMQVEGTKSAEEMLAILQKVLEDSAPVLVAARLDAEERRNNMRLREEQDAAYRAALEADQARERQRREEQERQQREAAESERKQKKEEEARARAALEAAEKEAARARIRQEKATSLGTEPEKGPNVTHVLVRFPTGERKERRFYSTSTIGSIYDYIDSLGCLEIEDYSLVSNFPRVIYGPEKYLMSLKEAGLHPQASLFVELNS 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10701892 10704693 - Bda031340.1 Bda09g00683 12933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00683 492 Pfam UBA-like domain 6 46 - -
Bda09g00683 492 SUPERFAMILY UBA-like 5 44 IPR009060 GO:0005515
Bda09g00683 492 ProSiteProfiles UBX domain profile. 410 488 IPR001012 GO:0005515
Bda09g00683 492 Coils Coil 341 404 - -
Bda09g00683 492 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 10-LIKE 1 274 - -
Bda09g00683 492 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 10-LIKE 288 492 - -
Bda09g00683 492 PANTHER FAS-ASSOCIATED PROTEIN 1 274 - -
Bda09g00683 492 MobiDBLite consensus disorder prediction 346 411 - -
Bda09g00683 492 MobiDBLite consensus disorder prediction 43 74 - -
Bda09g00683 492 CDD UBX 416 489 - -
Bda09g00683 492 CDD UAS 178 311 - -
Bda09g00683 492 MobiDBLite consensus disorder prediction 346 404 - -
Bda09g00683 492 CDD UBA_FAF 11 42 - -
Bda09g00683 492 Pfam UBX domain 410 489 IPR001012 GO:0005515
Bda09g00683 492 Gene3D Glutaredoxin 147 314 - -
Bda09g00683 492 Gene3D - 2 51 - -
Bda09g00683 492 SMART ubx_3 408 490 IPR001012 GO:0005515
Bda09g00683 492 SMART 45neu3 162 306 IPR006577 -
Bda09g00683 492 SUPERFAMILY Thioredoxin-like 157 319 IPR036249 -
Bda09g00683 492 SUPERFAMILY Ubiquitin-like 370 489 IPR029071 -
Bda09g00683 492 Gene3D - 413 491 - -
Bda09g00683 492 PANTHER FAS-ASSOCIATED PROTEIN 288 492 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00683 K18726 FAF2, UBXD8; FAS-associated factor 2 - zju:107430076 605.905
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00662 Bda-Chr9:10081329 Bda09g00683 Bda-Chr9:10701892 0 dispersed
Bda09g00683 Bda-Chr9:10701892 Bda14g00804 Bda-Chr14:6190696 4.91E-22 dispersed
Bda09g00683 Bda-Chr9:10701892 Bda06g00075 Bda-Chr6:750208 1.59E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g218 . . . . . . Bma07g00995 . . . Cma02g00934 Cma15g01308 Car02g00683 Car15g01178 . . Cpe05g00779 . . . . . . . . . . . . . . . Cone12ag0544 . . . Csa05g00177 Chy09g01319 . Blo03g00816 . . Bda09g00683 Bpe08g00875 . . . . Cmo02g00943 Cmo15g01375 . . . . . . Bhi12g00100 . . Lac11g1941 Hepe06g1448 . Lcy12g1536 Cla01g00157 Cam01g0162 Cec01g0159 Cco01g0164 Clacu01g0158 Cmu01g0157 Cre09g2349 Lsi09g00149 . . Cme09g01868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006818 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00683 Bda_Chr09 FPKM 2.683341 2.031908 49.088264 48.534344 5.462618 7.621254 5.083676 52.899731 58.131893