Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00687 ATGGAGGTGATGGAGACGAGCGGGAGTAGAGCTCTGAGCAGCGACGCCGTGGAGACTATTTCAGCGAGGCTTTCATTGATTGACGACCTTTACTTTCCTCGCGCTCTCCATTCCGCCGCTACCGACCCCTCTCAACGCAAGACCATCCTAAGTGATCTCCTCCTTCGAGACGTCCCTGTTTTCTTAGAGCGCTATGGTTCACAGTTAACATTCAATGAACTCCACATTTTTGATGGACTTAAAGAAAATTATGAAGTGGACTGGCACTTGAAGCATCTCAGAAGCATAATCAGTCCAACATCAGATGAGCTACGATCAAGGTCCGTCACAGTGAAGAACAGAAGGCGGGCTTATCTAAATAAACTGATATTTGAGGGTCAGTATTTCTCAGAGGATGCAATGAGGGAGAGAGAGCCTTATTTGCATTATGAGTATGTTGGAAAGTTTCAGGATCCAAGTGGCAGAAGCATGGCAAGACCAGGGGAGAGATGGTCAGAGACATTAATGCGAAGAACAGAAGAAGCAATCTTGGTTGCAAAGATAAGAGGAGAGCAGCAGAAACTAGGGGTGGCTGAGAGGGATTGGATTGGTAACAATATAACCCAAGAGGAAGTAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAGGATGAAAAAGAGGATGAGGAAGAAGAGGAGAAACAGCAGAAAGTTAAGGAGAATGAGGGAGAAGCAAAAAAAGATTCAGTTGTCCAAGCTCGTCCTGATGCAACCAACGATGTCCAATCCTTCACAGAAGGGTCTGGCCTAGGAGGCACCTTATCTGCAGAAGAAATGCAAGATCAGATGGACCAATTTACCTCTATCATGCACGAGAAGTTTCTGTTGGGAGAAGATTCTGAGTATTTAGATTATTCAAAAATAGACAATGATCAGACATTGGATGATTATTGGCTGAGAGAAGTAAATGACGATGCCGAGGAGAAGTATTTTGATGAAGGTTAG 984 44.72 MEVMETSGSRALSSDAVETISARLSLIDDLYFPRALHSAATDPSQRKTILSDLLLRDVPVFLERYGSQLTFNELHIFDGLKENYEVDWHLKHLRSIISPTSDELRSRSVTVKNRRRAYLNKLIFEGQYFSEDAMREREPYLHYEYVGKFQDPSGRSMARPGERWSETLMRRTEEAILVAKIRGEQQKLGVAERDWIGNNITQEEVEEEEEEEEEEEDEKEDEEEEEKQQKVKENEGEAKKDSVVQARPDATNDVQSFTEGSGLGGTLSAEEMQDQMDQFTSIMHEKFLLGEDSEYLDYSKIDNDQTLDDYWLREVNDDAEEKYFDEG 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10771007 10773311 + Bda031347.1 Bda09g00687 12937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00687 327 MobiDBLite consensus disorder prediction 225 246 - -
Bda09g00687 327 MobiDBLite consensus disorder prediction 198 271 - -
Bda09g00687 327 MobiDBLite consensus disorder prediction 201 224 - -
Bda09g00687 327 MobiDBLite consensus disorder prediction 248 263 - -
Bda09g00687 327 PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 97 4 326 IPR018613 -
Bda09g00687 327 Coils Coil 198 235 - -
Bda09g00687 327 Pfam Coiled-coil domain containing protein 97-like, C-terminal 113 326 IPR040233 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00687 - - - csv:101207927 418.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00666 Bda-Chr9:10148983 Bda09g00687 Bda-Chr9:10771007 1.07E-154 dispersed
Bda09g00670 Bda-Chr9:10250849 Bda09g00687 Bda-Chr9:10771007 0 dispersed
Bda09g00671 Bda-Chr9:10266563 Bda09g00687 Bda-Chr9:10771007 0 dispersed
Bda09g00672 Bda-Chr9:10286277 Bda09g00687 Bda-Chr9:10771007 2.27E-155 dispersed
Bda09g00674 Bda-Chr9:10300689 Bda09g00687 Bda-Chr9:10771007 9.27E-155 dispersed
Bda09g00675 Bda-Chr9:10316351 Bda09g00687 Bda-Chr9:10771007 6.67E-156 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g569 . . . . . . Bma07g00988 . Cmo06g00847 . . . . . Sed07g1307 . . Bhi11g00092 Tan01g2115 Cmetu06g0637 . . . . . . . . . . . . . . . . . . . . Blo19g00157 . Bda09g00687 Bpe08g00873 . . . . . . Cma06g00825 . . . . . . . . . . . . . . . . . . . . Csa03g00219 Chy06g02101 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003798 11 2 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00687 Bda_Chr09 FPKM 0.204762 0.0 3.586299 4.09633 0.432092 0.0 0.253656 141.341003 138.464935