Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00688 ATGCTCGATTACAGCTTGCCCATTGCGAGGAGAACTAGGCAAAGGCAGGAGCAAGTTTACAGGGAATTGTACGAGGAGTTGCAGAAGAGGAAAAAGAAGAAGTGGGATTCTGATGTTGATTCTTGTACTGCTAGAGCACCAAATGCATCTTCGGGCGATGAATTGCTCAAGAATGTTAATGGGGTTGATGGGTCTCGACATTGCTCTCGCGGCTCGAAGCAGGATAATGTGGAGGAGACTAGAGTGTATAAACGACGGGGGAAACGAGATAACCCTGTAGATTTAGTTCCCAGTGAGAGTTCGCGGGCAAAAGATGTGCAGAAATCTGAAATCGGAGAGAAGGATGATGATGAGGAGGAAGAAGACCTAATTGAAGTGGAAAGTAGCAGTGATGAGGTTGTGCTGAATGAAAACAAGGAAGGCGTTGATTCAGCGCACTTCAAATGTTCAATTTCGAAGTCTGTAAGTACTGCTAAATGCGATGGATATAAATCTTTTAATGTTGATGATGAGGTTATTTCTGGGAATCGTTCAAATTTGAATTATCTAGATTCTGGTAAATGTAGTGAATATTTTTCTGTTGATGGAGACGATGAGGTTGTTTCTGGGAATTGTTCAATTTTTAATTTTGGAAAACCCGAAGATTATGTTTCTGTGGATCCTGTCGATGAAGTTATTTCTGGCAATGTCGATAACCATAACGAGGCTGAGGAATCTGAAGAAACGGAATTATCATCCAGCGAGAGCGAGGCAGATGGTATGAGTGATGAGGACTATGAAGTGACCGAATCGGAGAACTCAGTAGGTTCTGACTCGTCCGAGTCATCCTTGAGCTCATACGAAGAAGAGGGGAGGAAGAAAAGTGTCAAATGTGATGACACAATAAGGAGTTTTGGAGAAGCTGAGAAGGGAGAGAAGTTTGGCGATGGCGTGAAAATGGATAAACCGAATGGGTTTGACAGATTGGTTGATTGTGGCAGCGATGAGCTCGACGACACCAAAAACTGGGAGAATGAGGTTGACACCGACTCTAAGGTTAAGAGTTGGGCGAATACAAGTTGCTCAAATTTTAGTTCGACATTTGAAAAGAAGTGTATGGAGTTTGAAACTTTCAGTAACCCGTTTCGTGTTAGTGAAGGTATTGATATTGGGGAGAATGATGATTTCGATGCTAATGAAATTGATGATAGTGTTAAAAGCACTCATCCAAGTGAGAAAAAATCGGATTTAAATCAGCTGAAAACTTGTTATGGTAGATGGGAATCTAAAACAAACGACAACAATCCATGCAATTTTCCGCACAATGTCAGGCAAGAAAACAATGCTTATCCGTCAAAATCTAGTCAAGATAAGTTCGAATCCAGAACAAATAATGCCACTTTTCGTGAAAATGATGAATGTCCGTCGAAAGGATCAAATAATGCCAGTTTTTGTGGTATTTCAGGGAAAATGGGGAGAGATAGAAGTGACGAGTTTACTTCGGTGAAGCACAAAGGAGCAAACACGAATTTTGATATCTATCGTGTTCTTGTCGATTCGATATTTCATAATGAAGCCATTCGAGTAGAAGAGAAGGTTTTATCTACCGATCAAGTGTCCTATGAATTTGGACGTACAAGTGGTTCTCTTCCATTGAAATTCAAATTTGGAGTAGAGGAATCTATTTTGCCGGCCAAATCCGAAGAGGAACTTGAACTGGAAAAGCTTTGGGCTGAGCTTGAATTTGGTCTCAGCTGCTGCGAGTCTTATATGTGCTGTGATCAGCAGGCCGAAATTCCCGATGTTCCTCCTTCACGTTGCGGAGTCGACCGATCTACCTTCTGCTTTCAAGGCGTTCATCAGCTAATTCTCGATCAAGAAATCGGACTTAGATGCATGGTTTGCTCTTACGTGAAACTGGAAATCAAGTATATCGTGCCATCTTTTGATCCATATCCTTTTGGAAAGCCAAGCAGGAGATACTATGGTCCTGTAGATGGCTTCACCTTCAGTGACATTCGTAAGGATGATTCTGCTGGTGATTTTCACACCCAATCTAATTCTTACGATCACTGTGATGGTACAGTATGGGACATTATTCCGGGCATCAAGAAGAGTATGTATCCCCATCAATGCGAAGGGTTTGAATTTATTTGGAAAAACATAGCCGGAGGAATTAATCTCGATAAGTTAAGAAACAGAGGAATCTCCAGCGAGACTGGTGGATGCATAATTTCTCATGCCCCCGGGACAGGGAAAACGCGTCTAACCATCGTTTTTCTTCAGAGTTATATGGAGCTATACCCAAATTGCCGGCCAATGATTATTGCACCAAAGAGTATGCTTCTTACATGGGAAGAGGAGTTTGAGAAGTGGAAAGTGGGAATACCTTTTCACAACCTTAACAAGACCGAGTTCTCTGGCAAGGAAAATTGGGCTGTTCTTAGCCCTCTAATTCAAGGCCCGCAAGTCTGCCAAAATATAGATTTTGTTCGACTCGTGAAGCTCTATTCGTGGAAATTCGAAAAAAGCATCCTGGGTATAGGTTATCGGCTGTTTGAACAACTTGCAAGTGAACGCGTGCATTCTGAATTGGACGTACGAAAAATGCTTCTTGAATTTCCAGGAATCGTATTTTTCGACGAGGGCCACATTCCGCGAAACGATAGTAGTTACATCTGGCAGACTTTAATGCAATTGAAGACTGAAAAGCGGATCATCCTCTCAGGAACTCTTTTTCAGAATAATTTCACTGAGTTCTATAATACTCTAAGGTTGGCACGGCCAAAGTTTGCCTATGGGAAGGACGATATTTTGGAGAAAAAACGTGGCCGAAAGAAAAAAATTTCGAGAGCAAAGTGGGACTCTCTAACCAGTGCTATTGGTAAAGATGCCGATGATATGCTGGGAAGAGCCAAGGTGAGAGAAGTTCAAGCGATGATCAGCCCGTTTGTGCATATACACAAAGGAACCATACTTCAAGAAAGACTTCCAGGGCTAAGAAATTCAGTTATTATATTGAAACCAACAGAATTGCAGAGAAATGTTCTTCAGAGCATTCAAGAACTGAAGAATCCTTTGTTACTTGATTATTTGGAGTCTTTGATCTCAGTCCATCCATCACTATATCTCAAATTTAATAGAAACGAGTGTGTTGTCGACTTGGCCGCGTTGGAAAACTTGCGACTGAATTTAGATTCCGGCGTGAAAATACAATTTATCATTGAACTTGTTCGGTTAAGCCAACCTCTGAATGAAAAAGTTTTGATTTTTAGCCAATTCATCGAGCCTTTGAGCTTTGTAAGGGAACACCTGGAATTGCACTTTAATTGGATCCAAGGGAAGGAGGTGTTATGCATGGATGGAACCTGCGATATAAAGAAACGGCAATCTTCGATTAATATTCTTAACGATCCGACCAGCGAAGCAAGAGTGTTGCTGGCATCGACAAAGGCTTGCTCGGAAGGTATAAATCTGGTTGGAGCGTCGAGGGTAGTTTTGCTTGATGTTGTATGGAATCCATCTGTCGAAAGACAAGCTATTTCTCGCGCTTATCGACTAGGTCAGGAAAAACTAGTGTATACTTATCATCTCATTGCATCTGGGACGAGAGAAGAAGAAAAATACGATAGACAAGTGGAGAAAGATCGTATTTCTGAGATAATTTTCTCGTCCTCCGCTAAGAACAGTGGTCTGCCGAAAGTTTCACCCTCAGTTTCGGATGATAAAATATTGGAGGCCATGGTCGATAATGACAAGTTCAAGGAGGTCATTTTAGAGATAAGGAGCATATCAAACCAGGTCGATTTGGTCTAA 3795 41.61 MLDYSLPIARRTRQRQEQVYRELYEELQKRKKKKWDSDVDSCTARAPNASSGDELLKNVNGVDGSRHCSRGSKQDNVEETRVYKRRGKRDNPVDLVPSESSRAKDVQKSEIGEKDDDEEEEDLIEVESSSDEVVLNENKEGVDSAHFKCSISKSVSTAKCDGYKSFNVDDEVISGNRSNLNYLDSGKCSEYFSVDGDDEVVSGNCSIFNFGKPEDYVSVDPVDEVISGNVDNHNEAEESEETELSSSESEADGMSDEDYEVTESENSVGSDSSESSLSSYEEEGRKKSVKCDDTIRSFGEAEKGEKFGDGVKMDKPNGFDRLVDCGSDELDDTKNWENEVDTDSKVKSWANTSCSNFSSTFEKKCMEFETFSNPFRVSEGIDIGENDDFDANEIDDSVKSTHPSEKKSDLNQLKTCYGRWESKTNDNNPCNFPHNVRQENNAYPSKSSQDKFESRTNNATFRENDECPSKGSNNASFCGISGKMGRDRSDEFTSVKHKGANTNFDIYRVLVDSIFHNEAIRVEEKVLSTDQVSYEFGRTSGSLPLKFKFGVEESILPAKSEEELELEKLWAELEFGLSCCESYMCCDQQAEIPDVPPSRCGVDRSTFCFQGVHQLILDQEIGLRCMVCSYVKLEIKYIVPSFDPYPFGKPSRRYYGPVDGFTFSDIRKDDSAGDFHTQSNSYDHCDGTVWDIIPGIKKSMYPHQCEGFEFIWKNIAGGINLDKLRNRGISSETGGCIISHAPGTGKTRLTIVFLQSYMELYPNCRPMIIAPKSMLLTWEEEFEKWKVGIPFHNLNKTEFSGKENWAVLSPLIQGPQVCQNIDFVRLVKLYSWKFEKSILGIGYRLFEQLASERVHSELDVRKMLLEFPGIVFFDEGHIPRNDSSYIWQTLMQLKTEKRIILSGTLFQNNFTEFYNTLRLARPKFAYGKDDILEKKRGRKKKISRAKWDSLTSAIGKDADDMLGRAKVREVQAMISPFVHIHKGTILQERLPGLRNSVIILKPTELQRNVLQSIQELKNPLLLDYLESLISVHPSLYLKFNRNECVVDLAALENLRLNLDSGVKIQFIIELVRLSQPLNEKVLIFSQFIEPLSFVREHLELHFNWIQGKEVLCMDGTCDIKKRQSSINILNDPTSEARVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAYRLGQEKLVYTYHLIASGTREEEKYDRQVEKDRISEIIFSSSAKNSGLPKVSPSVSDDKILEAMVDNDKFKEVILEIRSISNQVDLV 1264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10776701 10781450 - Bda031348.1 Bda09g00688 12938

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00688 1264 MobiDBLite consensus disorder prediction 278 292 - -
Bda09g00688 1264 Coils Coil 13 33 - -
Bda09g00688 1264 MobiDBLite consensus disorder prediction 226 292 - -
Bda09g00688 1264 MobiDBLite consensus disorder prediction 112 128 - -
Bda09g00688 1264 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 4 1256 IPR044567 GO:0080188
Bda09g00688 1264 MobiDBLite consensus disorder prediction 68 111 - -
Bda09g00688 1264 Gene3D - 674 962 IPR038718 -
Bda09g00688 1264 Pfam SNF2-related domain 732 1012 IPR000330 GO:0005524|GO:0140658
Bda09g00688 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 689 933 IPR027417 -
Bda09g00688 1264 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 727 923 IPR014001 -
Bda09g00688 1264 SMART ultradead3 696 934 IPR014001 -
Bda09g00688 1264 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 4 1256 - -
Bda09g00688 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 983 1218 IPR027417 -
Bda09g00688 1264 MobiDBLite consensus disorder prediction 29 131 - -
Bda09g00688 1264 CDD SF2_C_SNF 1063 1192 - -
Bda09g00688 1264 Gene3D - 991 1255 IPR027417 -
Bda09g00688 1264 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1065 1229 IPR001650 -
Bda09g00688 1264 MobiDBLite consensus disorder prediction 236 264 - -
Bda09g00688 1264 SMART helicmild6 1096 1181 IPR001650 -
Bda09g00688 1264 Pfam Helicase conserved C-terminal domain 1063 1181 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00688 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - csv:105435045 883.248
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda07g00129 Bda09g00688 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00949 Bda-Chr6:26287979 Bda09g00688 Bda-Chr9:10776701 2.21E-89 dispersed
Bda07g00129 Bda-Chr7:1633263 Bda09g00688 Bda-Chr9:10776701 1.04E-98 dispersed
Bda09g00688 Bda-Chr9:10776701 Bda08g00888 Bda-Chr8:16016681 2.46E-40 dispersed
Bda09g00688 Bda-Chr9:10776701 Bda09g00676 Bda-Chr9:10387762 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g573 . . . . . . . . . . Cma02g01579 . Car02g01343 . . . Cpe05g00211 . . . . . . . . . . . . . . Cone8ag0437 Cone12ag0422 . . . . Chy04g00035 . . . Bda07g00129 Bda09g00688 Bpe08g00872 Bpe11g00360 . . Sed01g4061 Cmo02g01621 Cmo19g00395 . . . . . . Bhi05g00566 Tan07g1908 Cmetu04g1824 Lac11g2350 Hepe06g1725 . . Cla09g01200 Cam09g1268 Cec09g1282 Cco09g1316 . . Cre09g1228 . Csa03g04668 . Cme04g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005251 3 2 0 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 3 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16389 PF00176 SNF2_N 7.20E-15 CL0023 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00688 Bda_Chr09 FPKM 13.304852 15.08005 27.232611 26.557508 8.734686 10.410201 11.178435 39.422718 40.042805