Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00704 ATGGCTGTTTCTTCTGAGCAAGAGCCTCCATCTCCTGCGGTTATCCAAGCAGTCGATGAGATCATGAGAATTTACAGATCGCTGCCTCGGAGACCTTCCGTTGAGGAGGTTGAAGCGGCTGCGTCAGTTGTCGACACTGTTAATAACGAGGAGCAGGCGAAGCTCGAAGAAATCTCGAAGAAAGACGCTCCTCAAGGTGTTCCGCAGGAGCTGTTCTCTGTTCTGCAGCAGGTGAGAAAGAACGTGGTGTTGTTGCAGAGCCATGAGCAGAAGAAAGAGGCTATTCACCTCGTCGAGCTTGATAAGATGTTTCAGACGTTCGATGATTTAATTCAGAAAGCTTCCAGGATTGTTTCTGGTGAGACGAATTCTGAAAAACTTGTTGATTTGAGTGAACCGGTGGAGCGATTAGAAATCAGCGATGAAAGTCTTGTGAAGAAGGGGGAAGATAAAGACTCTGAAAGGAATGATAAAAAGAATTTGGTCAGGAATTTTTCTGCGAAAGCTATTTTATCTTCAGGTTGGTCTCGACATTTTCACTATTTTCTTATGTTCAACAAACTCAATTTTGCTTCATCTTCTGCTATTTTTTTCCCCAAAATGTCTGATTCCAGATGTTTATGTTGTGTAGGTGGAGACTTTGGGAAAATGAACTTGATGAAAGTGGCAGCTCTCATCGAGAACTCGGCTAAGAAAGGTTCAATTGTGCTTGATCTGAAAGGGAAGTTGATGGATCAGATGGAATCTCTTCCTGTTTCCATTGGGAAATTATCAGATCTTACTGAATTAGACTTGTCTGAAAACAAGATCACGGTTCTTCCACCCAGTATTGTTAACCTCCGATCCTTAGCGAAACTTGATCTCCATTCGAATCAGCTAGCTAACCTTCCTGATTCATTAGGTGAACTCATCAATCTGACCGACTTAGAACTTCGTGCTAACCGACTAAAATCATTGCCTGCTTCTTTTGGTAATTTGACAAACCTCGTTAATCTCAACTTGAGTTCAAATCAGTTCACTCATTTGCCTGAAACAATCGGGAATTTGACAAGTTTGAAGAGATTGAATGTGGAAACTAATGAGCTTGAAGAATTGCCTTACACCATTGGATCTTGCTCATCCCTAATGGAGCTAAGATTGGATTTCAATCAGCTCAAGGCTCTTCCAGAAGCAATAGGAAAGCTTGGAAACTTGGAGATTCTCACCCTGCATTATAATAGAATCAAAGGTCTTTCTACAACAATGGGCAATCTTTTGAATTTGAAAGAACTGGATGTTAGCTTCAACGAACTTGAATCAATTCCAGAGAACCTTTGTTTCGCAGTAAACCTTAAGAAATTAAACGTGGGGAAGAACTTTGCAGACCTGAGAGCCTTGCCAAGATCAATCGGAAACCTTGAGATGCTGGAAGAGTTGGATATAAGTGCTAATCAGATTACAGCTCTGCCAGAGTCTTTCAGATTCTTATCCAAATTGAGAGTTCTTCAAACAGATGAAACTCCGTTGGAAGATCCACCGAAACAAGTGTTTAAATTGGGGGCACAGGCTGTTGTTCAGTACATGGCAGATTCAGTGGCTAAAAGGAATGTCAAACCTCAACAACCAGAGAAAAAGAAGTTTTTGTTCTGGGTTTGTTCAATTTTTTGCTCACACAGTAGAAACTCCAGCAAAACAAATTAA 1680 41.13 MAVSSEQEPPSPAVIQAVDEIMRIYRSLPRRPSVEEVEAAASVVDTVNNEEQAKLEEISKKDAPQGVPQELFSVLQQVRKNVVLLQSHEQKKEAIHLVELDKMFQTFDDLIQKASRIVSGETNSEKLVDLSEPVERLEISDESLVKKGEDKDSERNDKKNLVRNFSAKAILSSGWSRHFHYFLMFNKLNFASSSAIFFPKMSDSRCLCCVGGDFGKMNLMKVAALIENSAKKGSIVLDLKGKLMDQMESLPVSIGKLSDLTELDLSENKITVLPPSIVNLRSLAKLDLHSNQLANLPDSLGELINLTDLELRANRLKSLPASFGNLTNLVNLNLSSNQFTHLPETIGNLTSLKRLNVETNELEELPYTIGSCSSLMELRLDFNQLKALPEAIGKLGNLEILTLHYNRIKGLSTTMGNLLNLKELDVSFNELESIPENLCFAVNLKKLNVGKNFADLRALPRSIGNLEMLEELDISANQITALPESFRFLSKLRVLQTDETPLEDPPKQVFKLGAQAVVQYMADSVAKRNVKPQQPEKKKFLFWVCSIFCSHSRNSSKTN 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11201097 11203142 + Bda031369.2 Bda09g00704 12954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00704 559 ProSiteProfiles Leucine-rich repeat profile. 259 280 IPR001611 GO:0005515
Bda09g00704 559 ProSiteProfiles Leucine-rich repeat profile. 420 441 IPR001611 GO:0005515
Bda09g00704 559 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 4 14 557 - -
Bda09g00704 559 Gene3D Ribonuclease Inhibitor 211 534 IPR032675 -
Bda09g00704 559 SMART LRR_bac_2 441 462 - -
Bda09g00704 559 SMART LRR_bac_2 280 299 - -
Bda09g00704 559 SMART LRR_bac_2 326 345 - -
Bda09g00704 559 SMART LRR_bac_2 303 322 - -
Bda09g00704 559 SMART LRR_bac_2 372 391 - -
Bda09g00704 559 SMART LRR_bac_2 257 276 - -
Bda09g00704 559 SMART LRR_bac_2 349 368 - -
Bda09g00704 559 SMART LRR_bac_2 418 437 - -
Bda09g00704 559 SMART LRR_bac_2 395 414 - -
Bda09g00704 559 SMART LRR_bac_2 466 485 - -
Bda09g00704 559 SMART LRR_typ_2 257 279 IPR003591 -
Bda09g00704 559 SMART LRR_typ_2 280 301 IPR003591 -
Bda09g00704 559 SMART LRR_typ_2 395 417 IPR003591 -
Bda09g00704 559 SMART LRR_typ_2 326 348 IPR003591 -
Bda09g00704 559 SMART LRR_typ_2 418 441 IPR003591 -
Bda09g00704 559 SMART LRR_typ_2 349 372 IPR003591 -
Bda09g00704 559 SMART LRR_typ_2 489 512 IPR003591 -
Bda09g00704 559 SMART LRR_typ_2 373 394 IPR003591 -
Bda09g00704 559 SMART LRR_typ_2 466 488 IPR003591 -
Bda09g00704 559 SMART LRR_typ_2 303 325 IPR003591 -
Bda09g00704 559 ProSiteProfiles Leucine-rich repeat profile. 328 349 IPR001611 GO:0005515
Bda09g00704 559 PANTHER LEUCINE-RICH REPEAT-CONTAINING 14 557 - -
Bda09g00704 559 Pfam Leucine rich repeat 374 431 IPR001611 GO:0005515
Bda09g00704 559 Pfam Leucine rich repeat 255 293 IPR001611 GO:0005515
Bda09g00704 559 Pfam Leucine rich repeat 305 362 IPR001611 GO:0005515
Bda09g00704 559 ProSiteProfiles Leucine-rich repeat profile. 282 303 IPR001611 GO:0005515
Bda09g00704 559 SUPERFAMILY L domain-like 246 506 - -
Bda09g00704 559 SMART LRR_sd22_2 303 328 - -
Bda09g00704 559 SMART LRR_sd22_2 395 413 - -
Bda09g00704 559 SMART LRR_sd22_2 257 282 - -
Bda09g00704 559 SMART LRR_sd22_2 466 491 - -
Bda09g00704 559 SMART LRR_sd22_2 418 440 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00704 - - - gra:105791943 669.463
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01449 Bda-Chr7:26950128 Bda09g00704 Bda-Chr9:11201097 3.52E-08 dispersed
Bda09g00704 Bda-Chr9:11201097 Bda15g00540 Bda-Chr15:8473381 5.33E-06 dispersed
Bda07g00105 Bda-Chr7:1289622 Bda09g00704 Bda-Chr9:11201097 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g166 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0867 Cone9ag0873 . . . . Blo03g00818 . . Bda09g00704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00681 Chy07g01132 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006201 2 1 3 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38