Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00731 ATGGCTTTCCGTGAGACTGGAAATGTGGTTCACGTGATCACAGACAGTGAGAGTGAAAACTTGTTGACCGAGGTTTGGGCGACGGAAGACGAATACAGAGCTTGGAACAATGGCGGTGAAATTTCCATGGAGAATCTCACCAACTCGAATTATGATCAGAGACAGTCTCAATCCCTTTCAGGGAGCGAGCCTCCAAGCAAGAAATCTAGAAACTCTCAAGATGCGACATCCTCAAACCGATCGAAAGCTATCGGAAAAATGTTCTTCAAGACCAAGCTCTGCTGTAAATTCCGAGCTGGGACTTGCCCATACATCACAAATTGCAATTTTGCTCATAGCATCGAAGAGCTTAGACGACCACCGCCAAATTGGCAAGAAATCGTGGCTGCCCACGATGAAGAAAGGGCAGTGATGGCCGAACCCAGAGAGGAATTTCAGATTCCTTCCATTGGATCTTCAGGTTTTGGCACTGAGACTCAAAGGTCCTATAAGGGAAGACATTGTAAGAAGTTTTACTCAGAAGAAGGTTGTCCCTACGGGGATAATTGCACGTTTCTTCATGACGAGCAGTCAAAAAACCGAGAGAGCGTGGCGATAAGCTTAGGTCCAGGCGGGTATAATGGCGTTCCCACTGGAGCAGCAAATATGAAGCCCTCAAACTGGAAAACAAGGATCTGCAATAAGTGGGAGTTGACTGGATATTGCCCATTTGGAAGCAAATGCCATTTCGCCCATGGAGCTGCTGGTATGTCTGATGAACTTGTAGATTTTCATCTTTCTGTTGTATAA 789 46.01 MAFRETGNVVHVITDSESENLLTEVWATEDEYRAWNNGGEISMENLTNSNYDQRQSQSLSGSEPPSKKSRNSQDATSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHDEERAVMAEPREEFQIPSIGSSGFGTETQRSYKGRHCKKFYSEEGCPYGDNCTFLHDEQSKNRESVAISLGPGGYNGVPTGAANMKPSNWKTRICNKWELTGYCPFGSKCHFAHGAAGMSDELVDFHLSVV 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12626323 12627111 + Bda031423.1 Bda09g00731 12981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00731 262 Gene3D - 83 119 - -
Bda09g00731 262 Gene3D - 213 251 - -
Bda09g00731 262 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Bda09g00731 262 SUPERFAMILY CCCH zinc finger 161 190 IPR036855 GO:0046872
Bda09g00731 262 MobiDBLite consensus disorder prediction 51 80 - -
Bda09g00731 262 ProSiteProfiles Zinc finger C3H1-type profile. 220 248 IPR000571 GO:0046872
Bda09g00731 262 PANTHER CCCH ZINC FINGER/TIS11-RELATED 24 250 IPR045877 GO:0003729
Bda09g00731 262 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 24 250 - -
Bda09g00731 262 ProSiteProfiles Zinc finger C3H1-type profile. 162 190 IPR000571 GO:0046872
Bda09g00731 262 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Bda09g00731 262 SMART c3hfinal6 220 247 IPR000571 GO:0046872
Bda09g00731 262 SMART c3hfinal6 162 189 IPR000571 GO:0046872
Bda09g00731 262 Pfam CCCH-type zinc finger 166 188 IPR041367 -
Bda09g00731 262 SUPERFAMILY CCCH zinc finger 218 247 IPR036855 GO:0046872
Bda09g00731 262 Gene3D - 155 205 - -
Bda09g00731 262 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 221 246 IPR000571 GO:0046872
Bda09g00731 262 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 113 IPR000571 GO:0046872
Bda09g00731 262 SUPERFAMILY CCCH zinc finger 86 119 IPR036855 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00731 - - - csv:101210161 434.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01860 Bda-Chr1:54704120 Bda09g00731 Bda-Chr9:12626323 2.45E-46 dispersed
Bda09g00731 Bda-Chr9:12626323 Bda09g01368 Bda-Chr9:45560085 1.60E-10 dispersed
Bda11g00684 Bda-Chr11:6863705 Bda09g00731 Bda-Chr9:12626323 8.66E-06 dispersed
Bda09g00731 Bda-Chr9:12626323 Bda02g00654 Bda-Chr2:47542942 4.19E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g684 . . . . . . Bma07g00926 Bma14g00159 . . Cma02g01621 . Car02g01380 . . . Cpe05g00170 . . . . . . . . . . . . . . . . . . . . Chy04g00106 . Blo03g00868 Blo19g00195 . Bda09g00731 Bpe08g00827 Bpe11g00328 . . . Cmo02g01666 Cmo19g00243 . . . . . Cpe15g00204 Bhi05g00481 . . . . . . . . . . . . . . Csa03g04597 . Cme04g00130
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004224 1 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 4 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16396 PF00642 zf-CCCH 4.90E-11 CL0537 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00731 Bda_Chr09 FPKM 0.0 0.0 1.618301 2.75817 0.0 0.0 0.0 0.0 0.0