Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00761 ATGGTTAGTGTTCTTTCTGCCTGCACACATTTGGGAGCCCTTGATTTAGGAAGGTGCACGCATGGATTCTTGTTGAGGAACATCACTCAGCTGAATTTTATCGTAGAGACATCCTTAATCGACATGTATGTCAAATGTGGGATGTTGGAGAAGGGGCTGCTTCTTTTCCAAAAGATGGGTAGGAAAAACCAGTTGTCTTATAGTGTTATGATCTCAGGCCTTGCTCTTCATGGCCGTGGTAGAGAAGCTCTGAAGGTTTTTGAACAAATGCTCGAGGAAGACTTAGAACCGGATAGTGTTGTGTATGTGGGCGTTTTGAGCGCTTGCAGTCGTGCCGGCCTAGTCGAGGATGGTCTCCGACATTTTAATCGAATGAAATCCGAGCACGGAATTGACCCAACGGTTCAACATTACGGTTGCATGGTGGATCTAATGGGCAGAGGCCGGAGGCTTAGAGAAGCCTTTGAGCTGATAGAGAACATGTCGATTCGACCGAACGATATCATCTGGCGAAGCCTTCTCGGTGCTTGTAAAGTCCATAATGACTTGGAACTCGGCAAGATCTCGGCGAGAAACCTCTTTCTGTTGAACGCACATAATCCTGGAGATTACGTGGTTTTATCAAACATTTATGCTGGTGCAAAAAAATGGGGCGATGCAGCTAAAGTTAGGATCGAAATGATCGATAAGGGTTTGATTCAGAGCCCGGGTTTTTGCTTGGTAGAGGTGAAAAGGAGAGTCTACAAATTCGTTGCGCAAGACATGTCACATCCAAAGCATCAAGACATTTACGAGATGATTCACCAAATTGAGTGGCAGTTGAGGTTCGAGGGGTATTCGCCCGACACATCTCAGGTGATGCTTGACGGTAATGAAGACGAGAAGAGAGAGAGATTGAAAGGTCACAGCCAGAAGTTGGCAATGGCTTTTGCGCTCATAAGTTCATCCCAAGGCTCTCCAATAAGAGTAGTAAGAAACGTCAGGATGTGTAGTGATTGTCATACTTACACTAAACTCATTTCAATGATCTATGAAAGACAAATTACTGTCCGAGATCGCAATTTCTTCCACCATTTTAAGGACGGAACTTGCTCGTGTAACGATTTTTGGTGA 1113 44.83 MVSVLSACTHLGALDLGRCTHGFLLRNITQLNFIVETSLIDMYVKCGMLEKGLLLFQKMGRKNQLSYSVMISGLALHGRGREALKVFEQMLEEDLEPDSVVYVGVLSACSRAGLVEDGLRHFNRMKSEHGIDPTVQHYGCMVDLMGRGRRLREAFELIENMSIRPNDIIWRSLLGACKVHNDLELGKISARNLFLLNAHNPGDYVVLSNIYAGAKKWGDAAKVRIEMIDKGLIQSPGFCLVEVKRRVYKFVAQDMSHPKHQDIYEMIHQIEWQLRFEGYSPDTSQVMLDGNEDEKRERLKGHSQKLAMAFALISSSQGSPIRVVRNVRMCSDCHTYTKLISMIYERQITVRDRNFFHHFKDGTCSCNDFW 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13741427 13742539 - Bda034124 Bda09g00761 13011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00761 370 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 98 133 IPR002885 -
Bda09g00761 370 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 63 97 IPR002885 -
Bda09g00761 370 PANTHER - 1 356 - -
Bda09g00761 370 Pfam PPR repeat 138 161 IPR002885 -
Bda09g00761 370 Pfam PPR repeat 37 62 IPR002885 -
Bda09g00761 370 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 356 - -
Bda09g00761 370 TIGRFAM PPR: pentatricopeptide repeat domain 37 61 IPR002885 -
Bda09g00761 370 TIGRFAM PPR: pentatricopeptide repeat domain 100 134 IPR002885 -
Bda09g00761 370 TIGRFAM PPR: pentatricopeptide repeat domain 66 99 IPR002885 -
Bda09g00761 370 Pfam DYW family of nucleic acid deaminases 278 370 IPR032867 GO:0008270
Bda09g00761 370 Pfam E motif 180 242 IPR046848 -
Bda09g00761 370 Pfam PPR repeat family 63 110 IPR002885 -
Bda09g00761 370 Gene3D Tetratricopeptide repeat domain 93 275 IPR011990 GO:0005515
Bda09g00761 370 Gene3D Tetratricopeptide repeat domain 25 92 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00761 - - - zju:107405750 577.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00761 Bda-Chr9:13741427 Bda11g00821 Bda-Chr11:8142813 3.22E-11 dispersed
Bda09g00761 Bda-Chr9:13741427 Bda03g01661 Bda-Chr3:55899609 3.75E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g750 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0499 . . . . . Chy04g00133 . . . . Bda09g00761 Bpe08g00802 . . . . . Cmo19g00226 . . . . . Cpe15g00184 Bhi05g00432 . . . Hepe06g1808 . Lcy12g1981 Cla09g01083 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00761 Bda_Chr09 FPKM 10.827724 13.155451 13.297755 13.826303 11.173549 11.182752 9.552322 17.660479 15.790272