Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda09g00764 | ATGGAGAGCTTTGGAGGTGGTGGTTATTTCGTCGACGACAAGGCTGCTCATGTCGAGAACATTTTCCTCGACTTTCTCAACAAGTTATTCTCTCTCTCTCTCTCTCTCATGTTCTTGCTCTCTCTCATTTCGTCTCCTACTGACATCCTATTTCGATTCAGCTTTCGTCTCGGTGGCCATTCAGGGGAAGCCTATTACGATGCTGAGATTGAAGCTATGAAGGCCTCTGAATCCACCACCATGTACATCGATTTCTCTCATCTCATCCGCTTCAACGATCTCCTTCACTTTGCTATCTCTGAAGAATACTTGAGGTTTGAACGCTACTTGAAGAACGCTTGCAAGCGATTCGTGATGGAAAAGAAGCCCACCTTCATTGCTGATGAAAACCTTGGCAAGGACATCAATGTTGCTTTTTTTAACATCCCCGTTTGTAAGAGGTTGAGGGAGTTGACTACAGCAGAAATTGGCAAATTAGTATCAGTGACAGGAGTTGTAACTCGTACAAGTGAGGTTCGACCAGAACTTCTCCAAGGGACCTTTAAGTGCCTTATGTGTGGAGGTGTGATAAAGAACATTGAACAGCAATTCAAGTATACAGAGCCAACAATTTGCATGAGCCCTACATGTACAAATAGAACGAAATGGGCATTACTGCGGCAAGAGAGCAAATTTGCTGATTGGCAAAGGGTGCGAATGCAAGAGACTTCCAAGGAGATACCAGCAGGATCTCTTCCTCGATCATTGGATGTAATTCTTCGTCATGAGATGGTCGAGCGAGCCAAGGCCGGAGACACGGTTGTTTTTACGGGTACAGTGGTTGTGATACCAGACATACTTGCACTGGCCTCTCCTGGTGAAAGAGCAGAAACCCGACGAGAAGGTTCCCAACGGCAAAGTTCTACTGTTGGACATGAAGGAGTGAGAGGCCTTAAAGCTCTAGGAGTGAGAGACCTGTCATATCGATTAGCTTTTATTGCCAACTCAGTTCAAATTGCTGAAGGTAGGAGAGATACTGATGTCAGGAATAGGAAAAGGGAAAGTGATGAAGAACAGCAGCAATTTACAGCGGAAGAGCTTGACGAAGTCCAAAGGATGAGGAATACGCCAGATTTCTTAAATAAACTTGTTGAGAGTGTTGCACCAACAGTCTTTGGTCACCAAGATATCAAGCGAGCTATCTTGCTTATGCTTCTAGGTGGAGTTCACAAGTATACTCATGAAGGCATCAATCTGAGAGGAGATATTAATGTTTGCATCGTAGGAGATCCAAGCTGTGCAAAATCTCAATTCCTGAAGTACACTTCAGGTATAGTTCCAAGATCTGTTTATACATCTGGGAAATCCTCTTCAGCGGCAGGGTTGACTGCAACTGTGGCAAAAGAACCTGAAACGGGGGAATTTTGTATTGAGGCCGGTGCTTTAATGCTTGCTGACAACGGGATTTGTTGCATTGATGAATTTGATAAAATGGATATTAGGGATCAGGTTGCAATTCATGAAGCGATGGAACAGCAAACTATAAGCATTACCAAAGCTGGAATACAAGCAACACTGAATGCTCGTACATCAATTCTGGCTGCTGCTAATCCTGCAGGTGGACGGTACAACAAGTCTAAACCATTGAAGTATAATGTGGCTCTTCCTCCTGCCATTCTCTCAAGGTTTGACCTGGTATACGTTATGATTGATGATCCAGATGATCAAACAGATTACCACATTGCCCACCACATCGTCAGAGTACATCAGAAGCGTGAAAATGCTCTTTCTCCGGCATTTTCTACTGCAGAGATTAAGAGATATATTGCATATGCAAAAACTTTAAAACCCAAGCTAAGCTCAGACGCAAGGAAATTGTTGGTTGACTCTTATGTTGCTTTACGTAGAGGAGATACCACTCCTGGCAGTAGAGTTGCATATCGCATGACTGTTAGACAACTTGAGGCATTGATCAGACTATCTGAAGCCATTGCTCGAAGTTATTTGGAAACTCTGGTGCATACATGTTTTGACAAATTTCATTCACTAGTATTTGATATCTCATTATTGATGGAATATACTCAGAAAGACATGCACGCAGGTACAACCACATCACGTTCTGTGGAGTCCAGTGAGATTGATCTCTCGGAGTTTCAAGAAGAAAACAATGTTGGTGACAATAATGTAGATAGGCCGGATGGTGATACTAACCAAGATGATTCTCAACCAAGCAATGATCCAGTTTCAGGAAACGAAATTGGTTCTGCAGCTGCAAATCGAGAAGGAAGAAAACTTGTTCTAAGTGATGAATATTTTCAGCGGATCACCCAAGCCCTCATTATGCACCTTAGGCAGCATGAAGAAACTGTAATGCAAGAAGGAACTGGGCTGGCGGGAATGAGACAGAGGGACTTGATTAAATGGTATGTGGATCAGCAGCATGCGAAAAATAAATATAGCTCCGAGGTGGAGGTTATAAACGAAGTGTCTAACATTAAAGCTATTATAGAGAGTTTAATACGAAGGCAAGGGCATTTGATAGTGGTGGACGATGGCAGGCCAGTTACAGAGGGTGAAGTTGCTGGACAATCATCAAATAGAAATGACAGAATTTTGGCTGTTGCTCCTAATTATGTCATTCATTGA | 2625 | 42.93 | MESFGGGGYFVDDKAAHVENIFLDFLNKLFSLSLSLMFLLSLISSPTDILFRFSFRLGGHSGEAYYDAEIEAMKASESTTMYIDFSHLIRFNDLLHFAISEEYLRFERYLKNACKRFVMEKKPTFIADENLGKDINVAFFNIPVCKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLMCGGVIKNIEQQFKYTEPTICMSPTCTNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERAKAGDTVVFTGTVVVIPDILALASPGERAETRREGSQRQSSTVGHEGVRGLKALGVRDLSYRLAFIANSVQIAEGRRDTDVRNRKRESDEEQQQFTAEELDEVQRMRNTPDFLNKLVESVAPTVFGHQDIKRAILLMLLGGVHKYTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYNKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKRENALSPAFSTAEIKRYIAYAKTLKPKLSSDARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSYLETLVHTCFDKFHSLVFDISLLMEYTQKDMHAGTTTSRSVESSEIDLSEFQEENNVGDNNVDRPDGDTNQDDSQPSNDPVSGNEIGSAAANREGRKLVLSDEYFQRITQALIMHLRQHEETVMQEGTGLAGMRQRDLIKWYVDQQHAKNKYSSEVEVINEVSNIKAIIESLIRRQGHLIVVDDGRPVTEGEVAGQSSNRNDRILAVAPNYVIH | 874 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 13933455 | 13940298 | - | Bda031480.2 | Bda09g00764 | 13014 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda09g00764 | 874 | Gene3D | - | 350 | 669 | IPR027417 | - | |
| Bda09g00764 | 874 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 11 | 826 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Bda09g00764 | 874 | MobiDBLite | consensus disorder prediction | 692 | 716 | - | - | |
| Bda09g00764 | 874 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 382 | 659 | IPR027417 | - | |
| Bda09g00764 | 874 | SMART | mcm | 144 | 683 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Bda09g00764 | 874 | Pfam | MCM P-loop domain | 360 | 582 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Bda09g00764 | 874 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 145 | 157 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Bda09g00764 | 874 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 248 | 259 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Bda09g00764 | 874 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 195 | 212 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Bda09g00764 | 874 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 307 | 328 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Bda09g00764 | 874 | Gene3D | - | 148 | 276 | IPR012340 | - | |
| Bda09g00764 | 874 | Pfam | MCM6 C-terminal winged-helix domain | 757 | 873 | IPR041024 | - | |
| Bda09g00764 | 874 | MobiDBLite | consensus disorder prediction | 336 | 355 | - | - | |
| Bda09g00764 | 874 | Gene3D | - | 754 | 874 | - | - | |
| Bda09g00764 | 874 | ProSiteProfiles | MCM family domain profile. | 372 | 578 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Bda09g00764 | 874 | Pfam | MCM N-terminal domain | 55 | 141 | IPR027925 | - | |
| Bda09g00764 | 874 | SUPERFAMILY | Nucleic acid-binding proteins | 59 | 278 | IPR012340 | - | |
| Bda09g00764 | 874 | MobiDBLite | consensus disorder prediction | 285 | 304 | - | - | |
| Bda09g00764 | 874 | ProSitePatterns | MCM family signature. | 481 | 489 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Bda09g00764 | 874 | Gene3D | - | 10 | 144 | - | - | |
| Bda09g00764 | 874 | MobiDBLite | consensus disorder prediction | 731 | 745 | - | - | |
| Bda09g00764 | 874 | Pfam | MCM AAA-lid domain | 598 | 667 | IPR041562 | - | |
| Bda09g00764 | 874 | MobiDBLite | consensus disorder prediction | 692 | 748 | - | - | |
| Bda09g00764 | 874 | Pfam | MCM OB domain | 148 | 276 | IPR033762 | - | |
| Bda09g00764 | 874 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM6 | 11 | 826 | - | - | |
| Bda09g00764 | 874 | Gene3D | - | 175 | 226 | - | - | |
| Bda09g00764 | 874 | CDD | MCM6 | 375 | 666 | - | - | |
| Bda09g00764 | 874 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 525 | 537 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Bda09g00764 | 874 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 413 | 428 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Bda09g00764 | 874 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 473 | 487 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Bda09g00764 | 874 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 552 | 560 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Bda09g00764 | 874 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 501 | 514 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda09g00338 | Bda-Chr9:4340736 | Bda09g00764 | Bda-Chr9:13933455 | 4.28E-90 | dispersed | |
| Bda09g00764 | Bda-Chr9:13933455 | Bda10g00656 | Bda-Chr10:40734099 | 7.38E-109 | dispersed | |
| Bda09g00764 | Bda-Chr9:13933455 | Bda14g00572 | Bda-Chr14:4347542 | 7.32E-107 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda09g00764 | K02542 | - | jre:108993888 | 1283.47 |