Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00805 ATGGAAGTGGTATGTGAAAGCAGTAAAGATGAAGCAGGAATCAAGCTGTTTGGGAAGACTATTATATTCCGAAGTATAAAAGAAAACGAAGAGGAAATGAAAGCGGATCGGAAGACGGAGGAGAAGAGGCCGGAAAAGATAATACCATGTCCGAGATGCAAGAGTATGGAGACCAAGTTTTGCTACTTCAACAACTACAACGTTAACCAACCCAGACATTTTTGCAAAGCTTGTCAGAGGTACTGGACCGCCGGAGGCGCCCTCCGCAACGTCCCAGTCGGCGCCGGACGCCGGAAGAACAAGCCAGCTTGTGGAGGCCTCAACCAATTTCCAGAGAGTTATCTGTATGGGGTGCCAGACTGGCCTTTTACCACGGGAGATGAAGATTTCCGGCGAGACTTTCTAATGAAGCGTCGTCGGGCGAGTCAAAGGCATTATTATTGA 444 48.42 MEVVCESSKDEAGIKLFGKTIIFRSIKENEEEMKADRKTEEKRPEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKACQRYWTAGGALRNVPVGAGRRKNKPACGGLNQFPESYLYGVPDWPFTTGDEDFRRDFLMKRRRASQRHYY 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15566524 15566967 - Bda031549.1 Bda09g00805 13055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00805 147 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 5 117 - -
Bda09g00805 147 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
Bda09g00805 147 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
Bda09g00805 147 Pfam Dof domain, zinc finger 46 101 IPR003851 GO:0003677|GO:0006355
Bda09g00805 147 PANTHER CYCLIC DOF FACTOR 2 5 117 IPR045174 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00805 - - - mnt:21389240 175.637
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00030 Bda-Chr2:1393842 Bda09g00805 Bda-Chr9:15566524 2.92E-70 dispersed
Bda07g01470 Bda-Chr7:27415974 Bda09g00805 Bda-Chr9:15566524 6.28E-33 dispersed
Bda09g00805 Bda-Chr9:15566524 Bda10g01065 Bda-Chr10:44669598 2.84E-37 dispersed
Bda09g00803 Bda-Chr9:15524111 Bda09g00805 Bda-Chr9:15566524 4.74E-85 proximal
Bda09g00805 Bda-Chr9:15566524 Bda09g00808 Bda-Chr9:15672814 1.57E-107 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda07g00980 CCT 8 165 C2C2-Dof Transcription Factor Family AT1G29160 56.4 2.9e-46 181.8
Bda09g00805 . 7 140 C2C2-Dof Transcription Factor Family AT1G29160 53.3 2.2e-38 155.6
Bda09g00808 . 7 140 C2C2-Dof Transcription Factor Family AT1G29160 52.7 2.9e-38 155.2
Bda07g00980 CCT 8 165 C2C2-Dof Transcription Factor Family AT2G34140 53.7 9.0e-45 176.8
Bda09g00808 . 7 140 C2C2-Dof Transcription Factor Family AT2G34140 54.7 2.2e-38 155.6
Bda09g00805 . 7 140 C2C2-Dof Transcription Factor Family AT2G34140 53.4 8.2e-38 153.7
Bda09g00153 . 1 119 C2C2-Dof Transcription Factor Family AT2G37590 54.2 1.3e-36 150.6
Bda14g00300 . 1 122 C2C2-Dof Transcription Factor Family AT5G02460 55.8 1.1e-37 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000183 6 5 2 3 4 8 10 7 8 6 7 7 6 7 8 9 7 3 5 7 7 7 6 11 6 8 5 8 5 3 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16402 PF02701 zf-Dof 1.40E-32 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00805 Bda_Chr09 FPKM 4.053042 3.921073 2.593462 2.15281 8.358558 8.337205 9.010277 3.918907 3.894574