Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00827 ATGGTCATGGTCTACTCAGTCGGCCATATCTCCGGTGCTCATTTCAATCCGGCTGTCACCATTGCCTTTGCTTCTACCAAGAGATTCCCTTGGAAACAGGTACCTCCTTATGTATCAGCTCAAATTGTTGGAGCAACCCTAGCAAGTGGTACCATTAGACTTTTATTTAACGAGAGAAACAGCGATTTTGCTCGAACACTTCCGTCCGGATCGCATGTTCAATCCCTTGTGATCGAATTCATAATCACTTTCGCTCTCATGTTTGTCATCTCTGGGGTTGCCACCGATAATAGAGCCATTGGTGAGCTGGCAGGTCTTGCAATTGGCGCAACGGTGGTTGTCAACGCGATGTTTGCTGGGCCAATATCAGGGGCGTCGATGAATCCAGCAAGAAGCTTAGGGCCTGCAATGGTGTCTAACAATTACAAAGGATTATGGATATACATAGTGGGTCCTACTCTTGGAGCAGTATGTGGAGCATGGGTCTACAACCTCATCAGATTTACCGATAAACCACTGCGAGAGATCACCAAAAGTGGCTCTTTCCTCAAAGGGTTGGGTAAAACCTGA 570 46.84 MVMVYSVGHISGAHFNPAVTIAFASTKRFPWKQVPPYVSAQIVGATLASGTIRLLFNERNSDFARTLPSGSHVQSLVIEFIITFALMFVISGVATDNRAIGELAGLAIGATVVVNAMFAGPISGASMNPARSLGPAMVSNNYKGLWIYIVGPTLGAVCGAWVYNLIRFTDKPLREITKSGSFLKGLGKT 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18008587 18015924 - Bda031594.1 Bda09g00827 13077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00827 189 TIGRFAM MIP: MIP family channel proteins 1 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda09g00827 189 Pfam Major intrinsic protein 2 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda09g00827 189 PRINTS Major intrinsic protein family signature 78 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda09g00827 189 PRINTS Major intrinsic protein family signature 146 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda09g00827 189 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda09g00827 189 PRINTS Major intrinsic protein family signature 109 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bda09g00827 189 SUPERFAMILY Aquaporin-like 1 177 IPR023271 -
Bda09g00827 189 ProSitePatterns MIP family signature. 14 22 IPR022357 -
Bda09g00827 189 Gene3D Glycerol uptake facilitator protein. 1 177 IPR023271 -
Bda09g00827 189 PANTHER AQUAPORIN NIP1-1 1 185 - -
Bda09g00827 189 PANTHER AQUAPORIN NIP2-1 1 185 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00825 Bda-Chr9:17868283 Bda09g00827 Bda-Chr9:18008587 7.15E-138 dispersed
Bda09g00827 Bda-Chr9:18008587 Bda12g00572 Bda-Chr12:11762990 1.84E-59 dispersed
Bda09g00826 Bda-Chr9:17878049 Bda09g00827 Bda-Chr9:18008587 4.02E-124 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00827 K09874 - mnt:21388091 310.071