Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00860 ATGGGATTATCCCAAGCTTTCTTGCTTTCTCTATTTCTTTCTTTAAATTGCTTCAGCGGAAGCAGCACGGAATTTGAAGTGGGTGATGAAGATGGGTGGGTCGTTCCTCAAGCAAAGAGTGACAGCCAAAAGTACAACCAGTGGGCCTCCAGAAACAGGTTCAAGGTTGACGACACAGTTCACTTCAAGTACAAGAAAGACTCAGTTTTGGTGGTGACAGAGGACGAATATGACCGGTGTCATTCTTCTCACCCAACCTTCTTCTCCAACAATGGCGACTCAGTGTTCAAACTGGACAGACCAGGGCTCTTCTTCTTCATCAGCGGAGTTTCCGGCCACTGCGAGAGGGGTCAGAAGATGATCATCAAAGTGCTGGATGTAGCCGCAGCTTCTCCCGTCCCAGCCAATCAAACGGTCGCCGCTGCTCCTTCCATTTCTGCCCCCATCATTCTTCTGCTGGCTTTCCCATTTGCTGGGATGCTATTCGCCTGA 492 49.59 MGLSQAFLLSLFLSLNCFSGSSTEFEVGDEDGWVVPQAKSDSQKYNQWASRNRFKVDDTVHFKYKKDSVLVVTEDEYDRCHSSHPTFFSNNGDSVFKLDRPGLFFFISGVSGHCERGQKMIIKVLDVAAASPVPANQTVAAAPSISAPIILLLAFPFAGMLFA 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21054413 21054985 - Bda031657.1 Bda09g00860 13110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00860 163 Gene3D - 22 129 IPR008972 -
Bda09g00860 163 PANTHER BLUE COPPER PROTEIN 9 151 IPR039391 GO:0009055
Bda09g00860 163 Pfam Plastocyanin-like domain 38 118 IPR003245 GO:0009055
Bda09g00860 163 SUPERFAMILY Cupredoxins 22 125 IPR008972 -
Bda09g00860 163 CDD OsENODL1_like 23 125 IPR041846 -
Bda09g00860 163 PANTHER EARLY NODULIN-LIKE PROTEIN 6 9 151 - -
Bda09g00860 163 ProSiteProfiles Phytocyanin domain profile. 23 126 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00860 - - - jre:109003316 193.741
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00300 Bda-Chr6:4977900 Bda09g00860 Bda-Chr9:21054413 4.12E-31 dispersed
Bda09g00514 Bda-Chr9:6802308 Bda09g00860 Bda-Chr9:21054413 4.59E-38 dispersed
Bda09g00860 Bda-Chr9:21054413 Bda12g00590 Bda-Chr12:15613676 1.15E-117 dispersed
Bda09g00860 Bda-Chr9:21054413 Bda14g00907 Bda-Chr14:7041790 6.26E-78 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda09g00514 . 8 146 Phytocyanin Superfamily AT5G53870 55.4 4.9e-40 162.2
Bda09g00860 . 1 142 Phytocyanin Superfamily AT1G48940 60.0 5.5e-45 177.6
Bda14g00907 . 492 618 Phytocyanin Superfamily AT1G48940 63.3 1.0e-43 173.3
Bda12g00590 CCT 1 142 Phytocyanin Superfamily AT1G48940 58.6 1.4e-43 172.9
Bda09g00514 . 5 140 Phytocyanin Superfamily AT4G27520 53.6 1.7e-37 153.7
Bda01g01015 . 12 172 Phytocyanin Superfamily AT2G25060 52.5 4.5e-42 167.9
Bda01g01224 . 41 191 Phytocyanin Superfamily AT5G15350 54.6 1.3e-46 183.0
Bda13g01701 . 32 181 Phytocyanin Superfamily AT5G15350 53.0 1.3e-43 172.9
Bda01g01015 . 10 176 Phytocyanin Superfamily AT4G31840 51.5 8.8e-43 170.2
Bda09g00860 . 21 131 Phytocyanin Superfamily AT3G18590 64.9 1.5e-40 162.9
Bda14g00907 . 512 621 Phytocyanin Superfamily AT3G18590 66.4 1.9e-40 162.5
Bda12g00590 CCT 21 131 Phytocyanin Superfamily AT3G18590 63.1 3.7e-39 158.3
Bda09g00514 . 8 146 Phytocyanin Superfamily AT5G53870 55.4 4.9e-40 162.2
Bda09g00514 . 5 140 Phytocyanin Superfamily AT4G27520 53.6 1.7e-37 153.7
Bda09g00860 . 21 131 Phytocyanin Superfamily AT3G18590 64.9 1.5e-40 162.9
Bda14g00907 . 512 621 Phytocyanin Superfamily AT3G18590 66.4 1.9e-40 162.5
Bda12g00590 CCT 21 131 Phytocyanin Superfamily AT3G18590 63.1 3.7e-39 158.3
Bda09g00860 . 1 142 Phytocyanin Superfamily AT1G48940 60.0 5.5e-45 177.6
Bda14g00907 . 492 618 Phytocyanin Superfamily AT1G48940 63.3 1.0e-43 173.3
Bda12g00590 CCT 1 142 Phytocyanin Superfamily AT1G48940 58.6 1.4e-43 172.9
Bda01g01015 . 24 177 Phytocyanin Superfamily AT5G25090 53.4 4.7e-39 157.9
Bda01g01015 . 12 172 Phytocyanin Superfamily AT2G25060 52.5 4.5e-42 167.9
Bda01g01015 . 10 176 Phytocyanin Superfamily AT4G31840 51.5 8.8e-43 170.2
Bda01g01224 . 41 191 Phytocyanin Superfamily AT5G15350 54.6 1.3e-46 183.0
Bda13g01701 . 32 181 Phytocyanin Superfamily AT5G15350 53.0 1.3e-43 172.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000973 5 4 1 1 2 2 4 2 2 3 3 2 3 3 3 3 2 2 5 3 2 4 3 3 2 3 2 3 2 3 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda09g00860 Bda_Chr09 FPKM 3.582621 4.942975 4.461576 5.205051 1.449646 0.0 0.0 3.569701 4.145898