Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00876 ATGTCTTCGAAATCTGGCAGTAGCAGCGCAACTCGTGTTGGGAAGTATGCATTAGGCCGTACTTTGGGCGAAGGTAACTTCGCCAAGGTTAAATTTGCTCGGAACATGGAGAGCGGCCAGAATGCGGCGATCAAAATCCTTGATAAGGAGAAACTTTTCAAGTACAAGATGATAGACCAGATTAAAAGAGAAATATCAACAATGAAACTAATCAGACATCCTAATGTCATCCGCATGTATGAGGTAATGGCTAGCAAGACCAAAATTTACATTGTCATGGAATTTATTACTGGTGGAGAATTGTTTGGCAGAATTGCGAGTACAGGGAGATTTAAAGAAGATGAGGGAAGGAAGTACTTTCAGCAGCTTATTAATGCTGTGGATTATTGTCATAGCAGAGGTGTTTTTCATAGGGACCTAAAGCCTGAAAATTTGTTGCTGGATTCGAATGGAGTTCTTAAAGTTTCTGACTTTGGGTTGAGCGCTCTACCTCAGCAAGTTCGAGGAGATGGACTGCTTTACACAACATGTGGAACACCAAATTATGTTGCCCCAGAGGTGATCAATAACAAAGGCTATGATGGAGCGAAGGCAGATCTATGGTCATGTGGTGTAATTCTTTTTGTCCTAGTGGCTGGTTACCTTCCCTTCGAAGACTCCAACCTCACAACATTGTACAAAAAGATACATAAAGCTGACTTCTGTTGTCCGTCATGGTTTTCGACGGGTGCCAAGAAATTAGTCAAGAGAATTTTGGATCCCAACCCCTCAACTCGAATTACCATTGCTGAGGTTATTAAGAATGAATGGTTTAAGAAAGGATATAAACCACCCGTTTTTGAACATTCTGCTGTTCATTTTGATGATGTTGATGCTATCTTCGATGAATCAGTGGATACACATAACCTTGTTGTAGAGAGCAGAGAAGAAAGGCCTATGGGTCCTGTCACCATGAATGCTTTTGAGCTTATCTCTACATCTCAGGGTCTCAACCTTGGGACACTTTTTGAGAAGCAAATGGGACTTGTCAAATGTGAAACGAGGTTCACATCCAAGTGTCCAGTTAATGAGATCATTTCCAAGATTGACGATGTTGCAACTCCCTTGGGATTTAATGTGAAGAAAAATAACTTCAAGATGAAACTTCAAGGAGGCAACACTGGTCGGAAAGGTCATTTATTAGTTGCAACTGAGATTTATGAAGTTGCCCCTTTGCTTTACATGGTTGAAGTTCGCAAGTCTGGGGGAGATACTTTAGAATTTCATGAGTTCTATAAAAATCTCTACACTGGGCTGAAAGATATAGTATGGAAAACTGATGATAACACAGAGGAAGCAACTGCTGGTACTTCTGTTGTCAAATCTATGTAG 1371 40.77 MSSKSGSSSATRVGKYALGRTLGEGNFAKVKFARNMESGQNAAIKILDKEKLFKYKMIDQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVMEFITGGELFGRIASTGRFKEDEGRKYFQQLINAVDYCHSRGVFHRDLKPENLLLDSNGVLKVSDFGLSALPQQVRGDGLLYTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLVAGYLPFEDSNLTTLYKKIHKADFCCPSWFSTGAKKLVKRILDPNPSTRITIAEVIKNEWFKKGYKPPVFEHSAVHFDDVDAIFDESVDTHNLVVESREERPMGPVTMNAFELISTSQGLNLGTLFEKQMGLVKCETRFTSKCPVNEIISKIDDVATPLGFNVKKNNFKMKLQGGNTGRKGHLLVATEIYEVAPLLYMVEVRKSGGDTLEFHEFYKNLYTGLKDIVWKTDDNTEEATAGTSVVKSM 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22627210 22651268 + Bda031685.2 Bda09g00876 13126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00876 456 Pfam NAF domain 315 375 IPR004041 GO:0007165
Bda09g00876 456 Gene3D Kinase associated domain 1, KA1 313 438 - -
Bda09g00876 456 CDD STKc_SnRK3 15 270 - -
Bda09g00876 456 SUPERFAMILY Protein kinase-like (PK-like) 13 303 IPR011009 -
Bda09g00876 456 Gene3D Phosphorylase Kinase; domain 1 5 95 - -
Bda09g00876 456 CDD CIPK_C 319 434 - -
Bda09g00876 456 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Bda09g00876 456 Gene3D Transferase(Phosphotransferase) domain 1 96 278 - -
Bda09g00876 456 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 10 443 - -
Bda09g00876 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Bda09g00876 456 PANTHER SERINE/THREONINE KINASE 10 443 - -
Bda09g00876 456 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda09g00876 456 SMART serkin_6 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda09g00876 456 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda09g00876 456 ProSiteProfiles NAF domain profile. 313 337 IPR018451 GO:0007165
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda02g00137 Bda09g00876 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00137 Bda-Chr2:19715219 Bda09g00876 Bda-Chr9:22627210 0 dispersed
Bda09g00876 Bda-Chr9:22627210 Bda13g00406 Bda-Chr13:5008980 0 dispersed
Bda02g00321 Bda-Chr2:43221950 Bda09g00876 Bda-Chr9:22627210 9.73E-40 wgd
Bda02g00217 Bda-Chr2:37984911 Bda09g00876 Bda-Chr9:22627210 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69807 PF00069 Pkinase 6.20E-72 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00876 - - zju:107414012 741.88