Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00878 ATGAGGCTCTCTTCATCTGGTTTTAGCCCTCAAAACCAAGAAGGTGAAATGAGGGTCCTGAATTCTGAGCTTTGGCACGCCTGCGCAGGGCCCCTTGTTTCGCTACCTGCGGTCGGGAGCCGTGTTGTATATTTTCCTCAGGGTCACAGCGAGCAGGTGGTGGTTACGACAAATAAAGAAGTCGATTCCCATATCCCTAACTATCCAACCTTGCCACCACAACTAATTTGTCAACTACACAATGTAACCATGCATGCTGATGTCGAAACAGATGAAGTGTACGCTCAAATGACATTGCAGCCTCTGAGCCCTCAAGAGCAAAAGGAAGCATATCTTCCGGCTGAGTTGGGCATCCCAAGCAAACAGCCAACAAACTATTTTTGTAAGACATTGACAGCCAGTGACACAAGTACTCATGGAGGGTTTTCTGTGCCTCGACGAGCCGCTGAGAAAGTGTTTCCTCCATTGGACTTCTCCCAGCAGCCCCCAGCCCAGGAGTTGATTGCTAGAGATCTTCATGATAATGAATGGAAATTTAGACATATATTCCGCGGTCAGCCGAAAAGGCACCTCCTAACAACTGGATGGAGTGTGTTTGTGAGTGCTAAACGGCTTGTTGCTGGCGATTCCGTGCTCTTCATATGGAATGAGAAAAACCAGTTGCTACTTGGAATTCGCCGTGCTACTCGACCGCAGACAATGATGCCTTCATCAGTTTTATCAAGTGACAGCATGCACTTAGGCCTTCTTGCAGCTGCTGCGCATGCTGCTGCCACAAATAGCCGTTTCTCAATATTTTACAATCCGAGGGCTAGCCCATCTGAATTTGTGATACCCTTGGCAAAATATGTGAAAGCAGCCTATCATACTCGTGTGTCCGTTGGCATGCGGTTTAGAATGCTTTTTGAAACAGAAGAGTCAAGTGTCCGTCGCTACATGGGCACAATCACAGGCATTAGTGATCTAGATCCTGTTCGCTGGCGAAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACGGCCGGAGAGAGACAACCAAGAGTGTCTCTATGGGAAATTGAGCCGTTAACAACATTCCCGATGTATCCGTCTCCATTTCCACTTCGGCTCAAGCGACCATGGCCCACTGGACTGCCTGCTTTCCATGGGATTAAAGAGGATGAAGTGGGACTAAATTCTCCATTAATGTGGCTACGAGGAGATGCTGGGGATCGGGGAATTCAATCTTTGAACTTTCCCGGAGTTGGAGTGTCACCATGGATGCAGCCAAGACTTGATGCATCCATGTTTGGCTTGCAATCTGATATGTATCAAGCCATGGCTGCTGCTGCTCTGCAAGAAATGAGAGCGTCTGATCCATCCAAACTTCTTCAATTTCAGCAAACCCAGAGCCTGCCAGCCCGATCTCCTGCCCTGATTCAAACCCAGATGCTGCAAAATTCTCAGCCTCAACAAGGTCTTCTTCAGTCCGTTCAACAAAACCCACATCATACTCAATCCCAATCTCAAACTCAGTCGCATGTCCTTCAGCAGCAGATGCATCAACAGCAGCCATTCAGTAGTCAACATCAACAGCAACTGGTTGATCACCAAATTCCGAGCACTAGTTTCAACTATCTCTCAGTTTTCGACTACTTCTCAACCCTCGTCATCATCGATGCAGACACTCCCATCGCTATGCCCACAACAGAGCTTCTCCGATTCAAATGTTAA 1722 47.74 MRLSSSGFSPQNQEGEMRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVVTTNKEVDSHIPNYPTLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKEAYLPAELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTMMPSSVLSSDSMHLGLLAAAAHAAATNSRFSIFYNPRASPSEFVIPLAKYVKAAYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWRNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPAFHGIKEDEVGLNSPLMWLRGDAGDRGIQSLNFPGVGVSPWMQPRLDASMFGLQSDMYQAMAAAALQEMRASDPSKLLQFQQTQSLPARSPALIQTQMLQNSQPQQGLLQSVQQNPHHTQSQSQTQSHVLQQQMHQQQPFSSQHQQQLVDHQIPSTSFNYLSVFDYFSTLVIIDADTPIAMPTTELLRFKC 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22884781 22888855 - Bda031689.1 Bda09g00878 13128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00878 573 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Bda09g00878 573 MobiDBLite consensus disorder prediction 486 530 - -
Bda09g00878 573 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 540 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bda09g00878 573 Gene3D - 291 363 - -
Bda09g00878 573 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Bda09g00878 573 CDD B3_DNA 126 227 IPR003340 GO:0003677
Bda09g00878 573 PANTHER AUXIN RESPONSE FACTOR 6 1 540 - -
Bda09g00878 573 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bda09g00878 573 Gene3D - 125 229 IPR015300 -
Bda09g00878 573 SMART B3_2 127 229 IPR003340 GO:0003677
Bda09g00878 573 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00741 Bda-Chr3:6302195 Bda09g00878 Bda-Chr9:22884781 1.25E-77 dispersed
Bda09g00878 Bda-Chr9:22884781 Bda12g00280 Bda-Chr12:3024876 0 dispersed
Bda14g00072 Bda-Chr14:567865 Bda09g00878 Bda-Chr9:22884781 1.39E-89 dispersed
Bda09g00878 Bda-Chr9:22884781 Bda02g00770 Bda-Chr2:48437939 1.60E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16413 PF02362 B3 1.30E-21 CL0405 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00878 - - mnt:21394681 888.256