Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g00968 ATGTACAATAGTCAATTCGATGGCAATGCTGCTTTTTCAGGGGGTGGCTTTATGCCCTCACAAGCCACTCAAGCTCCCGAAACCTCCTACTCTGCCACCAAAAATCGCGAAATCCAGGCCTTACTTCCACTAACTGTAAAGCAGATAAATGATGCATTTCTGTCAAGTGATGATAAATCAAATTTCGTCGTAGATGGAGTTGATGTAAACAATGTTAAACTTGTGGGGATGGTAGGCAATAGAGCTGGAAGAATCACTGATTTGACTTTTATACTTGATGATGGAACTGGCCGAATCGACTGTAACAAATGGGATGGAATGTATGTCCGTATTCATGGACACTTGAAAAGTTTTCAAGGTAAAAGGACTCTGAATGTCTTCTCTATCAGGCCAGTCACTGATTTTAATGAGATTCCCAATCACTTCATCGAGTGTATGTACGTCCATCTCTACAATACCAGGCACAAGCAAAAGAGTGGTATACCTAATCAGCCACATATGACAAGTTCAGCTTCTAATCCACCTATTATGGGGCACCATGCTGCTATGTCAAATCAATTCTTGGGCCAGTATAATGTTGGTGGACAGAAAAGTATTGAACAAATGATCTTAGAGTTCTTGCAGCTCCCTTCATGCGACACGGACCGGGGTGCCCACCGAGATGTTATTGCTCGACAGCTTAATGTTCCAGTGGATAAGCTCATGCATAGATGGACTGGTAGATACGAAGCTCATTTGTGGGATAACAGTTGCAGACGAGAAGGTCAGAGTAGAAAAGGAAGACAAGGTGGATATGACAAGGAAGATAAAGCAGCAAGAGCTTATGATCTTGCTGCCCTTAAGTACTGGGGTCCGACCACCACTACAAACTTTTCTGTCTGCAACTATGAGAAGGAGCTGGAGGAGATGAAGAACATGACCAGACAAGAATTTGTTGCTTCGCTTAGAAGGAAAAGTAGTGGGTTTTCTCGAGGAGCCTCCATTTATAGAGGAGTGACAAGGCATCATCAGCATGGTAGGTGGCAAGCAAGGATTGGAAGGGTTGCAGGCAACAAAGATCTCTATCTGGGAACATTCGGTACTCAAGAAGAAGCTGCAGAAGCATATGACATTGCCGCCATAAAATTCAGAGGCCTCAATGCAGTGACCAACTTCGACATGAGCCGCTACGACATCAAAAGCATCGCCAGTACCAACCTTCCGATCGGAGGAGTTGCCGGGAAATCTAAAACCTCCTCCGATTCCATCTCCGATAGCAAAAGTCTCGACGGAAACCGGTTGGACGACAGAGATCATTCGGCTTCCTCTTCTTCAACCTTCCGGGCCCAACCTAATACCTCTGCATTAGCCTTCTCCATGCCTATCAAGGAAGACCCATCAGATAATAATTACTGGCCAATGCTCAGCTACCAAAACAGTTCCTTCCTCAACTCTAGAAACCCTAACCCACCTTTTTCCATGGAGTTTTCCTCAGGTTCTTCAGTTGATGAAGGCTACAACATTCATCTGCAAAATGGGGGTCATTCTGATCAGATTTCAAGTCCGTTTTCAACACCCATTTGCTTAAATGCTGAGATGAACGCTTATGAAGGTTCAAATCATCCAGGCTATGGAAACCTGGTAGGGCAAACGATGTATTCTAAACCTAATTTTTTTCAGACGGCCATTTTTGGTGTAGAATGA 1683 44.21 MYNSQFDGNAAFSGGGFMPSQATQAPETSYSATKNREIQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVGNRAGRITDLTFILDDGTGRIDCNKWDGMYVRIHGHLKSFQGKRTLNVFSIRPVTDFNEIPNHFIECMYVHLYNTRHKQKSGIPNQPHMTSSASNPPIMGHHAAMSNQFLGQYNVGGQKSIEQMILEFLQLPSCDTDRGAHRDVIARQLNVPVDKLMHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGPTTTTNFSVCNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDIKSIASTNLPIGGVAGKSKTSSDSISDSKSLDGNRLDDRDHSASSSSTFRAQPNTSALAFSMPIKEDPSDNNYWPMLSYQNSSFLNSRNPNPPFSMEFSSGSSVDEGYNIHLQNGGHSDQISSPFSTPICLNAEMNAYEGSNHPGYGNLVGQTMYSKPNFFQTAIFGVE 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38813225 38827411 - Bda031949.1 Bda09g00968 13218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g00968 560 CDD RPA2_DBD_D 73 150 - -
Bda09g00968 560 MobiDBLite consensus disorder prediction 403 442 - -
Bda09g00968 560 ProSiteProfiles AP2/ERF domain profile. 328 386 IPR001471 GO:0003700|GO:0006355
Bda09g00968 560 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 236 427 - -
Bda09g00968 560 SMART rav1_2 235 298 IPR001471 GO:0003700|GO:0006355
Bda09g00968 560 SMART rav1_2 328 392 IPR001471 GO:0003700|GO:0006355
Bda09g00968 560 Gene3D - 37 155 IPR012340 -
Bda09g00968 560 ProSiteProfiles AP2/ERF domain profile. 218 292 IPR001471 GO:0003700|GO:0006355
Bda09g00968 560 SUPERFAMILY DNA-binding domain 327 388 IPR016177 GO:0003677
Bda09g00968 560 SUPERFAMILY DNA-binding domain 235 293 IPR016177 GO:0003677
Bda09g00968 560 MobiDBLite consensus disorder prediction 404 420 - -
Bda09g00968 560 Pfam AP2 domain 328 378 IPR001471 GO:0003700|GO:0006355
Bda09g00968 560 Gene3D AP2/ERF domain 231 294 IPR036955 GO:0003700|GO:0006355
Bda09g00968 560 Gene3D AP2/ERF domain 328 388 IPR036955 GO:0003700|GO:0006355
Bda09g00968 560 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 236 427 - -
Bda09g00968 560 MobiDBLite consensus disorder prediction 421 435 - -
Bda09g00968 560 CDD AP2 327 388 IPR001471 GO:0003700|GO:0006355
Bda09g00968 560 SUPERFAMILY Nucleic acid-binding proteins 41 154 IPR012340 -
Bda09g00968 560 Pfam Replication protein A C terminal 149 234 IPR014892 -
Bda09g00968 560 CDD AP2 235 291 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00040 Bda-Chr3:523491 Bda09g00968 Bda-Chr9:38813225 7.31E-47 dispersed
Bda09g00968 Bda-Chr9:38813225 Bda10g00018 Bda-Chr10:354206 5.12E-06 dispersed
Bda09g00968 Bda-Chr9:38813225 Bda03g00160 Bda-Chr3:1319585 1.61E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16417 PF08784 RPA_C 2.10E-05 CL0123 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g00968 K09285 - pop:7488963 442.58