Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01003 ATGATTCATAGAAGAAAAAAAAAACACCTTTGCTTCACTGCTTTGTCTTCTTTAATGGACTCGGTTGCTGCATCTATGAAAAAAGACGCGGATGCTCAAATCCCGAACTACCCAAATCTTCCGTCGAAGATTCTGTGCCTCCTTCACAATGTAACTTTACATGCTGATCCAGAAACGGATGAAGTATATGCTCAAATGACTTTACAACCAGTTTCCTCGTTGGATAAGGATGCATTACTGAGATCCGATCTTGCACTCAAGTCTAATAAGCCGCAGCCCGAATTTTTTTGTAAGACGTTGACGGCAAGCGATACAAGCACTCATGGGGGATTTTCAGTTCCTCGTCGTGCGGCGGAGAAAATTTTCCCTCCTCTTGATTTCTCCTTGCAGCCACCGGCTCAAGAACTTACGGCAAGGGATTTGCACGATAATGTGTGGAGGTTTCGTCATATCTATCGCGGACAACCGAAACGCCATTTGCTGACAACTGGTTGGAGCCTATTTGTCAGTGGAAAGAGGCTTCTTGCTGGCGACTCTGTTTTGTTCATTAGGGATGAAAGGCAGCAGCTGCTTCTGGGAATTAGACGGGCTAACAGGCAGCCCACCAACTTATCGTCATCTGTCCTGTCGAGCGATAGTATGCATATCGGAATTCTTGCTGCAGCAGCTCATGCAGCTGCCAACAATAGCCCCTTCAATGTCTTTTACAATCCAAGGGCTAGTCCTTCGGAATTCGTTATACCTCTAGCGAAATACTACAAAGCTGTCTATGGAAATCAATTATCGCTCGGCATGCGTTTCCGGATGATGTTCGAAACTGAAGATTCTGGAACCAGAAGGTATATGGGCACAATTACAGGCATCAGTGATCTTGATCCCATCAGATGGAAGAACTCTCAATGGCGTAATCTGCAGGTCGGGTGGGATGAATCCACTGCCGGAGAGAGGCGAAATCGAGTTTCGATATGGGAAATCGAACCCGTGATAGCCCCATTTTTCATCTGCCCACCCCCGTTCTTGAGATCGAAGCGTCCGAGGCAACCCGGAATGCCAGATGACGAGGCCCACGATATGGATAGCCTGTTTAAAAGGGCAATGCCTTGGCTTGGAGATGATGGTACTAGCATGAAGGATTCTCAGGCACTTCCTGGCCTAAGCCTGGTTCAATGGATGAATATGCAGCAAAACCCATCTTCAGCCAACTCAATACAAACAAACTATATTCAACCCTTTTCCAATACCCTTTTACAAAACCTCAATGGAGCACAAATTCCGCCGACGAATAACTTGCAGTTTAACGCCCAAAAGCTACCTCAGCAACTTCCACAGTTTGATCAGCTTACTAAACTCCCGTCTGGGATTAGCCCTTTAGGATCAGTTGTCCATACTCCGCAACAGTCGGGCGATGTTTTTCAGCAGCCTATGCAAAATTTGGTCAATCAAAGCCTACCTGCCAGCCAAGTTCCCCTCCAAATACTGCAACCACAAGCACTGCCTCAGAGCAACTGTAATAATATTCAGCAGCAGCCTTCTTCTCAGAGCCTTCATTTTCAAAGAAATCTTCATCAAAGCTTGGAAATGCAGAATATTATTGGTCAGACTGATCAGCAGAATGCTATTCAATCTCACCTCCTTGCTCAAGCAAATCAGCAGCTACCAATATCCGATAATCAGGCTAATCTTCAACTCTTGCAGAGGCAACAACAGTCGCTTCAATCACAGCAGTCTGCACTACAGCAGCAAGCTCAACTTATTCAGCTCCATGATCAGCAGAGACAGCTTTTAGATGTTTCCCAGAGCTTCTCCACTGCCACTCCATCCCTACTGCCCCAATCGAACCAATTCAAGACGGCTAACCTGACAAATAATCACTTTTCCCTTCCAACCCTTCTGCCAAACGCCCCCCAACAAACGGGGGTGTTGAGTGATATGTCTGGTCGGATGAAAATATCCCCCACTCCAACGACTAATCATATCTCTGCAGCTTCTTGCAGTGTAGCAAATGGAACTGCCGGATTGGGTCAATCTGTGATTACCGATGAAGTTCCATCTTGCTCAACTTCACCTTCGACAAATAACTATGCAGATGTGGTTCAACCGTTGATTAATGGCCGGATTCATCGTTTTGGACTTGAAGAGGAAATGGCTCAGTCTGCATCTAAAATCTTGAGTCCTAACTCGATTAAAGATTTGCAGCCGAAGCCAGAAGTGAAGTCTTCGATCATTCTTCCCAAAAATCAAGAACAATGCTTGTTTTCCCAGCAAACGTTCTTAAATGGTGCCACTCCCCAAACAGATTTCTTGGACTCATCATCTTCAACTACTGCCGTCTGCCTTTCGCAGAACGAAGCCCGTTTGCAGCAGAATAACTGGATGTCATTCAATTCTCAACCATTGCTGAGAAATACAAGTCAAGAGCTTGAAGTTCCTGTCGATCAGCACCATAATTTCTCATTCGGGCCGAACATGGATGGTCAAGTGGGAGACCAGTTAATAATCGATCCTTTATCGTACAAGGGTGTGACAGGAATCAGCAAGGATTTCTCGAATATTCTGTCCTCCAATGGCACGACTGCAATATATGAAAATCCAGAAGACCCTCAAAAGGATCTTGCTTCTCCAGTAGCTTCTCAGTCATTTGGAGTTCCAGATATGGCGTTTAATTCCATTGATTCCACCATAAACGATAGCAGCTTCTTAAGCAGAAGTCAGTGGGCACCTCCTCCACAGATTCAAAGAATGAGGACATTCACCAAGGTCTACAAGCGAGGAGCTGTCGGAAGATCAATTGATATGACAAGATATTCGGGTTATGACGAACTCAAACAAGATCTTGCTCGAAGATTTGGCATCGAAGGCCAATTGGAGGACCGCCAGAGAATCGGATGGAAACTTGTGTATGTAGATCATGAGAATGACGTTTTACTCGTTGGGGACGATCCTTGGGAGGAGTTTGTGAGCTGTGTGAGGTGCATTAAGATCTTATCCCCTCAAGAAGTACAGCAAATGAATGATGATGGAGATATTGGAAATGGGGTCCTCCAAAATCAAGCATGCAGCAGCTCTGACTGTAGAAACACTTAA 3084 45.36 MIHRRKKKHLCFTALSSLMDSVAASMKKDADAQIPNYPNLPSKILCLLHNVTLHADPETDEVYAQMTLQPVSSLDKDALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSLQPPAQELTARDLHDNVWRFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDERQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFNVFYNPRASPSEFVIPLAKYYKAVYGNQLSLGMRFRMMFETEDSGTRRYMGTITGISDLDPIRWKNSQWRNLQVGWDESTAGERRNRVSIWEIEPVIAPFFICPPPFLRSKRPRQPGMPDDEAHDMDSLFKRAMPWLGDDGTSMKDSQALPGLSLVQWMNMQQNPSSANSIQTNYIQPFSNTLLQNLNGAQIPPTNNLQFNAQKLPQQLPQFDQLTKLPSGISPLGSVVHTPQQSGDVFQQPMQNLVNQSLPASQVPLQILQPQALPQSNCNNIQQQPSSQSLHFQRNLHQSLEMQNIIGQTDQQNAIQSHLLAQANQQLPISDNQANLQLLQRQQQSLQSQQSALQQQAQLIQLHDQQRQLLDVSQSFSTATPSLLPQSNQFKTANLTNNHFSLPTLLPNAPQQTGVLSDMSGRMKISPTPTTNHISAASCSVANGTAGLGQSVITDEVPSCSTSPSTNNYADVVQPLINGRIHRFGLEEEMAQSASKILSPNSIKDLQPKPEVKSSIILPKNQEQCLFSQQTFLNGATPQTDFLDSSSSTTAVCLSQNEARLQQNNWMSFNSQPLLRNTSQELEVPVDQHHNFSFGPNMDGQVGDQLIIDPLSYKGVTGISKDFSNILSSNGTTAIYENPEDPQKDLASPVASQSFGVPDMAFNSIDSTINDSSFLSRSQWAPPPQIQRMRTFTKVYKRGAVGRSIDMTRYSGYDELKQDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVSCVRCIKILSPQEVQQMNDDGDIGNGVLQNQACSSSDCRNT 1027
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39937064 39943318 - Bda032003.1 Bda09g01003 13253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01003 1027 Pfam B3 DNA binding domain 96 197 IPR003340 GO:0003677
Bda09g01003 1027 ProSiteProfiles B3 DNA-binding domain profile. 96 198 IPR003340 GO:0003677
Bda09g01003 1027 ProSiteProfiles PB1 domain profile. 915 999 IPR000270 GO:0005515
Bda09g01003 1027 SUPERFAMILY CAD & PB1 domains 928 993 - -
Bda09g01003 1027 Pfam Auxin response factor 222 305 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bda09g01003 1027 SMART B3_2 96 198 IPR003340 GO:0003677
Bda09g01003 1027 PANTHER AUXIN RESPONSE FACTOR 20 1022 - -
Bda09g01003 1027 Gene3D - 260 330 - -
Bda09g01003 1027 SUPERFAMILY DNA-binding pseudobarrel domain 85 225 IPR015300 -
Bda09g01003 1027 Pfam AUX/IAA family 913 1000 IPR033389 -
Bda09g01003 1027 Coils Coil 554 581 - -
Bda09g01003 1027 CDD B3_DNA 95 187 IPR003340 GO:0003677
Bda09g01003 1027 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 1022 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bda09g01003 1027 Gene3D - 910 1004 - -
Bda09g01003 1027 Gene3D - 94 197 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g01003 Bda-Chr9:39937064 Bda11g00093 Bda-Chr11:1081549 5.00E-57 dispersed
Bda09g01003 Bda-Chr9:39937064 Bda08g00454 Bda-Chr8:4700324 1.12E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16419 PF02309 AUX_IAA 2.20E-07 CL0072 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01003 - - qsu:111988787 1340.48