Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda09g01060 GTTTCCATGGCCGCCTCTAATTCGAACTCAACTGGTAATCTCAACGCCCAAAACTCTCTCCAGTCCATCTGCTACGAACGCGGTTCCCTTCGTCTTCTCGATCAGAGAAAGCTTCCTCTTGAAACTTTTTATCTGGATATCAAGGATGCAGCAGGTGGATGGCATGCGATAAGTGATATGGTGGTCCGTGGAGCACCTGCTATTGCAATTGCAGCCGCTCTCTCGTTGGCCGTCGAAGTTTTTAACTTGAGGGATTTTGGAGGGACCTCTAATGATGCAGCTATTTTTCTTAGCAATAAGCTGGATTACCTAGTTTCCAGCCGGCCAACTGCTGTGAATCTCTCTGATGCTGCTACAAAACTCAAACAAATAGTTTCAGAGGCATGTTCTACTTCGTCGAAAGACAGCAGCATTTTCCAGGCCTACATTGAGGCTGCTGAATCAATGCTTAAGGACGATGTTGCTTCAAATAAAGCGATTGGGTCATATGGAGCAGATTTTATCCAGGATCAACATAAATTATTGAACAAACTCTCTGTTCTAACCCACTGCAACACTGGCAGTCTTGCGACGGCTGGATATGGAACTGCCCTAGGTGTGATTCGCTCACTTCATGCTGAAGGGGTCTTACAAAGAGCCTACTGTACCGAAACAAGGCCATTTAATCAAGGATCCAGATTGACAGCATATGAGTTGGTGCATGAAAAAATACCTGCCACTCTCGTTGCAGATTCTGCTGCAGCTGCACTTATGCAACTAGGATGTGTGAATGCGGTCATTGTCGGAGCAGATCGTGTGGCTGCTAATGGCGATACGGCTAACAAGATTGGAACTTACAATCTGGCCTTAAGTGCAATGTATCACAAGGTCCCGTTTTATGTGGCAGCCCCATTGACTTCCGTAGATTTATCCCTTTCTTCTGGCCAAGAGATCGTCATTGAAGAACGGTCGCCTAAAGAGTTATTGCACTCCCGGGGCGGTCTTGGGGAGCAAGTTGCAGCTTCTGGAATCTCGGTCTGGAATCCGGCATTCGATGTTACCCCAGCTTCTCTCATATCAGGGATCATAACAGAAAAGGGGGTGATCACCAAGGAGAGTGGTGATGGTTTTGACATTAAGGGATTCGTCTATCGGAGAGGTGGGCAGGCCGCTGTCTAG 1158 47.24 VSMAASNSNSTGNLNAQNSLQSICYERGSLRLLDQRKLPLETFYLDIKDAAGGWHAISDMVVRGAPAIAIAAALSLAVEVFNLRDFGGTSNDAAIFLSNKLDYLVSSRPTAVNLSDAATKLKQIVSEACSTSSKDSSIFQAYIEAAESMLKDDVASNKAIGSYGADFIQDQHKLLNKLSVLTHCNTGSLATAGYGTALGVIRSLHAEGVLQRAYCTETRPFNQGSRLTAYELVHEKIPATLVADSAAAALMQLGCVNAVIVGADRVAANGDTANKIGTYNLALSAMYHKVPFYVAAPLTSVDLSLSSGQEIVIEERSPKELLHSRGGLGEQVAASGISVWNPAFDVTPASLISGIITEKGVITKESGDGFDIKGFVYRRGGQAAV 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40812964 40816230 + Bda032070.1 Bda09g01060 13310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda09g01060 385 TIGRFAM salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 21 364 IPR005251 -
Bda09g01060 385 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 18 375 - -
Bda09g01060 385 TIGRFAM eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 50 364 IPR011559 GO:0044249
Bda09g01060 385 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 18 375 - -
Bda09g01060 385 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 20 373 IPR005251 -
Bda09g01060 385 Gene3D - 18 174 IPR027363 -
Bda09g01060 385 Gene3D - 175 371 IPR042529 -
Bda09g01060 385 SUPERFAMILY NagB/RpiA/CoA transferase-like 18 365 IPR037171 -
Bda09g01060 385 Pfam Initiation factor 2 subunit family 62 363 IPR000649 GO:0044237
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g01060 Bda-Chr9:40812964 Bda09g01261 Bda-Chr9:44244658 0 dispersed
Bda09g01060 Bda-Chr9:40812964 Bda01g01886 Bda-Chr1:55032435 2.09E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda09g01060 K08963 - csv:101210526 568.54